Multi-omic profiling of lung and liver tumor microenvironments of metastatic pancreatic cancer reveals site-specific immune regulatory pathways von Ho, Won Jin, Erbe, Rossin, Danilova, Ludmila, Phyo, Zaw, Bigelow, Emma, Stein-O'Brien, Genevieve, Thomas, Dwayne L., Charmsaz, Soren, Gross, Nicole, Woolman, Skylar, Cruz, Kayla, Munday, Rebecca M., Zaidi, Neeha, Armstrong, Todd D., Sztein, Marcelo B., Yarchoan, Mark, Thompson, Elizabeth D., Jaffee, Elizabeth M., Fertig, Elana J.

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Evaluating the impact of age on immune checkpoint therapy biomarkers von Erbe, Rossin, Wang, Zheyu, Wu, Sharon, Xiu, Joanne, Zaidi, Neeha, La, Jennifer, Tuck, David, Fillmore, Nathanael, Giraldo, Nicolas A., Topper, Michael, Baylin, Stephen, Lippman, Marc, Isaacs, Claudine, Basho, Reva, Serebriiskii, Ilya, Lenz, Heinz-Josef, Astsaturov, Igor, Marshall, John, Taverna, Josephine, Lee, Jerry, Jaffee, Elizabeth M., Roussos Torres, Evanthia T., Weeraratna, Ashani, Easwaran, Hariharan, Fertig, Elana J.

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Chromatin structure regulates cancer-specific alternative splicing events in primary HPV-related oropharyngeal squamous cell carcinoma von Guo, Theresa, Zambo, Kristina Diana A., Zamuner, Fernando T., Ou, Tingting, Hopkins, Christopher, Kelley, Dylan Z., Wulf, Hildegard A., Winkler, Eli, Erbe, Rossin, Danilova, Ludmila, Considine, Michael, Sidransky, David, Favorov, Alexander, Florea, Liliana, Fertig, Elana J., Gaykalova, Daria A.

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Evaluating the impact of age on immune checkpoint therapy biomarkers von Erbe, Rossin, Wang, Zheyu, Wu, Sharon, Xiu, Joanne, Zaidi, Neeha, La, Jennifer, Tuck, David, Fillmore, Nathanael, Giraldo, Nicolas A., Topper, Michael, Baylin, Stephen, Lippman, Marc, Isaacs, Claudine, Basho, Reva, Serebriiskii, Ilya, Lenz, Heinz-Josef, Astsaturov, Igor, Marshall, John, Taverna, Josephine, Lee, Jerry, Jaffee, Elizabeth M., Roussos Torres, Evanthia T., Weeraratna, Ashani, Easwaran, Hariharan, Fertig, Elana J.

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The use of machine learning to discover regulatory networks controlling biological systems von Erbe, Rossin, Gore, Jessica, Gemmill, Kelly, Gaykalova, Daria A., Fertig, Elana J.

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Transcriptomic forecasting with neural ordinary differential equations von Erbe, Rossin, Stein-O'Brien, Genevieve, Fertig, Elana J

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Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets von Erbe, Rossin, Kessler, Michael D, Favorov, Alexander V, Easwaran, Hariharan, Gaykalova, Daria A, Fertig, Elana J

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Abstract 136: Understanding Multi-allelic Heterozygous Variant Contributions to Dilated Cardiomyopathy von Happe, Cassandra, Deacon, Dekker, Erbe, Rossin, Tenerelli, Kevin, Tran, Vivien, Alder, Eric, Chi, Neil, Engler, Adam

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Antibody dependent cell-mediated cytotoxicity selection pressure induces diverse mechanisms of resistance von Zahavi, David J, Erbe, Rossin, Zhang, Yong-Wei, Guo, Theresa, Malchiodi, Zoe X, Maynard, Rachael, Lekan, Alexander, Gallagher, Rosa, Wulfkuhle, Julia, Petricoin, Emanuel, Jablonski, Sandra A, Fertig, Elana J, Weiner, Louis M

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Analysis of immune checkpoint blockade biomarkers in elderly patients using large-scale cancer genomics data von Erbe, Rossin, Wang, Zheyu, Wu, Sharon, Xiu, Joanne, Zaidi, Neeha, Lippman, Marc E., Isaacs, Claudine, Basho, Reva K, Lenz, Heinz-Josef, Astsaturov, Igor A., Marshall, John, Baylin, Stephen, Jaffee, Elizabeth M., Roussos Torres, Evanthia T., Weeraratna, Ashani, Easwaran, Hariharan, Fertig, Elana J.

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Abstract 4164: Relieving immune suppressive pathways in breast cancer to improve outcomes von Poissonnier, Amanda, Egeland, Eivind Valen, Erbe, Rossin, Horton, Wesley, Howells-Ferreira, Ana, Sivagnanam, Shamilene, Kirchberger, Nell, Murugan, Dhaarini, Fields, Andrew, Ordentlich, Peter, Adey, Andrew C., Fertig, Elana J., Coussens, Lisa M.

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PanIN and CAF transitions in pancreatic carcinogenesis revealed with spatial data integration von Bell, Alexander T.F., Mitchell, Jacob T., Kiemen, Ashley L., Lyman, Melissa, Fujikura, Kohei, Lee, Jae W., Coyne, Erin, Shin, Sarah M., Nagaraj, Sushma, Deshpande, Atul, Wu, Pei-Hsun, Sidiropoulos, Dimitrios N., Erbe, Rossin, Stern, Jacob, Chan, Rena, Williams, Stephen, Chell, James M., Ciotti, Lauren, Zimmerman, Jacquelyn W., Wirtz, Denis, Ho, Won Jin, Zaidi, Neeha, Thompson, Elizabeth, Jaffee, Elizabeth M., Wood, Laura D., Fertig, Elana J., Kagohara, Luciane T.

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Abstract 1459: Identification of transcription factor enrichments in HPV+ head and neck cancer using ChIP-seq and cistrome analysis von Zamuner, Fernando, Chan, Spencer S., Kessler, Michael, Vorontsov, Ilya, Danilova, Ludmila, Erbe, Rossin, Kelley, Dylan, Guo, Theresa, Imada, Eddie, Fertig, Elana J., Kulakovskiy, Ivan, Favorov, Alexander, Gaykalova, Daria A.

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Interrogation of T Cell-Enriched Tumors Reveals Prognostic and Immunotherapeutic Implications of Polyamine Metabolism von Harbison, R Alex, Pandey, Rajeev, Considine, Michael, Leone, Robert D, Murray-Stewart, Tracy, Erbe, Rossin, Mandal, Raj, Burns, Mark, Casero, Jr, Robert A, Seiwert, Tanguy, Fakhry, Carole, Pardoll, Drew, Fertig, Elana, Powell, Jonathan D

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BoolODE Simulated Time Series with single gene KO von Erbe, Rossin

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BoolODE Simulated Time Series within Single Cells von Erbe, Rossin

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hTERT RPE cells scEU-seq AnnData von Erbe, Rossin

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Pnacreatic Endocrine Development scRNAseq AnnData von Erbe, Rossin

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TCGARNA-seq von Rossin Erbe

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Filtered Input Data von Rossin Erbe

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