Inducible CRISPR activation screen for interferon-stimulated genes identifies OAS1 as a SARS-CoV-2 restriction factor von Danziger, Oded, Patel, Roosheel S, DeGrace, Emma J, Rosen, Mikaela R, Rosenberg, Brad R

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Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells von Daniloski, Zharko, Jordan, Tristan X., Wessels, Hans-Hermann, Hoagland, Daisy A., Kasela, Silva, Legut, Mateusz, Maniatis, Silas, Mimitou, Eleni P., Lu, Lu, Geller, Evan, Danziger, Oded, Rosenberg, Brad R., Phatnani, Hemali, Smibert, Peter, Lappalainen, Tuuli, tenOever, Benjamin R., Sanjana, Neville E.

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SARS-CoV-2 Orf6 hijacks Nup98 to block STAT nuclear import and antagonize interferon signaling von Miorin, Lisa, Kehrer, Thomas, Sanchez-Aparicio, Maria Teresa, Zhang, Ke, Cohen, Phillip, Patel, Roosheel S., Cupic, Anastasija, Makio, Tadashi, Mei, Menghan, Moreno, Elena, Danziger, Oded, White, Kris M., Rathnasinghe, Raveen, Uccellini, Melissa, Gao, Shengyan, Aydillo, Teresa, Mena, Ignacio, Yin, Xin, Martin-Sancho, Laura, Krogan, Nevan J., Chanda, Sumit K., Schotsaert, Michael, Wozniak, Richard W., Ren, Yi, Rosenberg, Brad R., Fontoura, Beatriz M. A., García-Sastre, Adolfo

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Intrinsic Immunity Shapes Viral Resistance of Stem Cells von Wu, Xianfang, Dao Thi, Viet Loan, Huang, Yumin, Billerbeck, Eva, Saha, Debjani, Hoffmann, Hans-Heinrich, Wang, Yaomei, Silva, Luis A. Vale, Sarbanes, Stephanie, Sun, Tony, Andrus, Linda, Yu, Yingpu, Quirk, Corrine, Li, Melody, MacDonald, Margaret R., Schneider, William M., An, Xiuli, Rosenberg, Brad R., Rice, Charles M.

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Cyclin F Controls Cell-Cycle Transcriptional Outputs by Directing the Degradation of the Three Activator E2Fs von Clijsters, Linda, Hoencamp, Claire, Calis, Jorg J.A., Marzio, Antonio, Handgraaf, Shanna M., Cuitino, Maria C., Rosenberg, Brad R., Leone, Gustavo, Pagano, Michele

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Decoupling expression and editing preferences of ADAR1 p150 and p110 isoforms von Sun, Tony, Yu, Yingpu, Wu, Xianfang, Acevedo, Ashley, Luo, Ji-Dung, Wang, Jiayi, Schneider, William M., Hurwitz, Brian, Rosenberg, Brad R., Chung, Hachung, Rice, Charles M.

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Characterizing immune repertoires by high throughput sequencing: strategies and applications von Calis, Jorg J.A, Rosenberg, Brad R

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The ETS transcription factor ELF1 regulates a broadly antiviral program distinct from the type I interferon response von Seifert, Leon Louis, Si, Clara, Saha, Debjani, Sadic, Mohammad, de Vries, Maren, Ballentine, Sarah, Briley, Aaron, Wang, Guojun, Valero-Jimenez, Ana M, Mohamed, Adil, Schaefer, Uwe, Moulton, Hong M, García-Sastre, Adolfo, Tripathi, Shashank, Rosenberg, Brad R, Dittmann, Meike

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Human Genetic Determinants of Viral Diseases von Kenney, Adam D, Dowdle, James A, Bozzacco, Leonia, McMichael, Temet M, St. Gelais, Corine, Panfil, Amanda R, Sun, Yan, Schlesinger, Larry S, Anderson, Matthew Z, Green, Patrick L, López, Carolina B, Rosenberg, Brad R, Wu, Li, Yount, Jacob S

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Longitudinal transcriptomic characterization of the immune response to acute hepatitis C virus infection in patients with spontaneous viral clearance von Rosenberg, Brad R, Depla, Marion, Freije, Catherine A, Gaucher, Denis, Mazouz, Sabrina, Boisvert, Maude, Bédard, Nathalie, Bruneau, Julie, Rice, Charles M, Shoukry, Naglaa H

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Transcriptomic characterization of fibrolamellar hepatocellular carcinoma von Simon, Elana P., Freije, Catherine A., Farber, Benjamin A., Lalazar, Gadi, Darcy, David G., Honeyman, Joshua N., Chiaroni-Clarke, Rachel, Dill, Brian D., Molina, Henrik, Bhanot, Umesh K., La Quaglia, Michael P., Rosenberg, Brad R., Simon, Sanford M.

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Single-cell resolution landscape of equine peripheral blood mononuclear cells reveals diverse cell types including T-bet(+) B cells von Patel, Roosheel S., Tomlinson, Joy E., Divers, Thomas J., Van de Walle, Gerlinde R., Rosenberg, Brad R.

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Single-cell RNA sequencing of equine mesenchymal stromal cells from primary donor-matched tissue sources reveals functional heterogeneity in immune modulation and cell motility von Harman, Rebecca M., Patel, Roosheel S., Fan, Jennifer C., Park, Jee E., Rosenberg, Brad R., van de Walle, Gerlinde R.

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Equine pegiviruses cause persistent infection of bone marrow and are not associated with hepatitis von Tomlinson, Joy E., Wolfisberg, Raphael, Fahnoe, Ulrik, Sharma, Himanshu, Renshaw, Randall W., Nielsen, Louise, Nishiuchi, Eiko, Holm, Christina, Dubovi, Edward, Rosenberg, Brad R., Tennant, Bud C., Bukh, Jens, Kapoor, Amit, Divers, Thomas J., Rice, Charles M., Van de Walle, Gerlinde R., Scheel, Troels K. H.

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A comparative study of in vitro air-liquid interface culture models of the human airway epithelium evaluating cellular heterogeneity and gene expression at single cell resolution von Prescott, Rachel A, Pankow, Alec P, de Vries, Maren, Crosse, Keaton M, Patel, Roosheel S, Alu, Mark, Loomis, Cynthia, Torres, Victor, Koralov, Sergei, Ivanova, Ellie, Dittmann, Meike, Rosenberg, Brad R

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A comprehensive analysis of the effects of the deaminase AID on the transcriptome and methylome of activated B cells von Fritz, Eric L, Rosenberg, Brad R, Lay, Kenneth, Mihailović, Aleksandra, Tuschl, Thomas, Papavasiliou, F Nina

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SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication von Higgins, Christina A, Nilsson-Payant, Benjamin E, Bonaventure, Boris, Kurland, Andrew P, Ye, Chengjin, Yaron, Tomer M, Johnson, Jared L, Adhikary, Prithy, Golynker, Ilona, Panis, Maryline, Danziger, Oded, Rosenberg, Brad R, Cantley, Lewis C, Martínez-Sobrido, Luis, tenOever, Benjamin, Johnson, Jeffrey R

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Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown von Chung, Hachung, Calis, Jorg J.A., Wu, Xianfang, Sun, Tony, Yu, Yingpu, Sarbanes, Stephanie L., Dao Thi, Viet Loan, Shilvock, Abigail R., Hoffmann, H.-Heinrich, Rosenberg, Brad R., Rice, Charles M.

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Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single-cell RNA sequencing von Cohen, Phillip, DeGrace, Emma J, Danziger, Oded, Patel, Roosheel S, Barrall, Erika A, Bobrowski, Tesia, Kehrer, Thomas, Cupic, Anastija, Miorin, Lisa, García-Sastre, Adolfo, Rosenberg, Brad R

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Identification of ADAR1 p150 and p110 Associated Edit Sites von Sun, Tony, Rosenberg, Brad R., Chung, Hachung, Rice, Charles M.

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