Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma von Zhao, Junfei, Chen, Andrew X., Gartrell, Robyn D., Silverman, Andrew M., Aparicio, Luis, Chu, Tim, Bordbar, Darius, Shan, David, Samanamud, Jorge, Mahajan, Aayushi, Filip, Ioan, Orenbuch, Rose, Goetz, Morgan, Yamaguchi, Jonathan T., Cloney, Michael, Horbinski, Craig, Lukas, Rimas V., Raizer, Jeffrey, Rae, Ali I., Yuan, Jinzhou, Canoll, Peter, Bruce, Jeffrey N., Saenger, Yvonne M., Sims, Peter, Iwamoto, Fabio M., Sonabend, Adam M., Rabadan, Raul

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arcasHLA: high-resolution HLA typing from RNAseq von Orenbuch, Rose, Filip, Ioan, Comito, Devon, Shaman, Jeffrey, Pe’er, Itsik, Rabadan, Raul

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Pervasiveness of HLA allele-specific expression loss across tumor types von Filip, Ioan, Wang, Anqi, Kravets, Oleksandr, Orenbuch, Rose, Zhao, Junfei, Perea-Chamblee, Tomin E, Manji, Gulam A, López de Maturana, Evangelina, Malats, Núria, Olive, Kenneth P, Rabadan, Raul

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Author Correction: Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma von Zhao, Junfei, Chen, Andrew X., Gartrell, Robyn D., Silverman, Andrew M., Aparicio, Luis, Chu, Tim, Bordbar, Darius, Shan, David, Samanamud, Jorge, Mahajan, Aayushi, Filip, Ioan, Orenbuch, Rose, Goetz, Morgan, Yamaguchi, Jonathan T., Cloney, Michael, Horbinski, Craig, Lukas, Rimas V., Raizer, Jeffrey, Rae, Ali I., Yuan, Jinzhou, Canoll, Peter, Bruce, Jeffrey N., Saenger, Yvonne M., Sims, Peter, Iwamoto, Fabio M., Sonabend, Adam M., Rabadan, Raul

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HLA Typing from RNA Sequencing and Applications to Cancer von Orenbuch, Rose, Filip, Ioan, Rabadan, Raul

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Toward trustable use of machine learning models of variant effects in the clinic von Dias, Mafalda, Orenbuch, Rose, Marks, Debora S., Frazer, Jonathan

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Additional file 1 of Pervasiveness of HLA allele-specific expression loss across tumor types von Filip, Ioan, Wang, Anqi, Kravets, Oleksandr, Orenbuch, Rose, Zhao, Junfei, Perea-Chamblee, Tomin E., Manji, Gulam A., López de Maturana, Evangelina, Malats, Núria, Olive, Kenneth P., Rabadan, Raul

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Guidelines for releasing a variant effect predictor von Livesey, Benjamin J, Badonyi, Mihaly, Dias, Mafalda, Frazer, Jonathan, Kumar, Sushant, Lindorff-Larsen, Kresten, McCandlish, David M, Orenbuch, Rose, Shearer, Courtney A, Muffley, Lara, Foreman, Julia, Glazer, Andrew M, Lehner, Ben, Marks, Debora S, Roth, Frederick P, Rubin, Alan F, Starita, Lea M, Marsh, Joseph A

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Guidelines for releasing a variant effect predictor von Livesey, Benjamin J, Badonyi, Mihaly, Dias, Mafalda, Frazer, Jonathan, Kumar, Sushant, Lindorff-Larsen, Kresten, McCandlish, David M, Orenbuch, Rose, Shearer, Courtney A, Muffley, Lara, Foreman, Julia, Glazer, Andrew M, Lehner, Ben, Marks, Debora S, Roth, Frederick P, Rubin, Alan F, Starita, Lea M, Marsh, Joseph A

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ProteinGym von Notin, Pascal, Kollasch, Aaron, Ritter, Daniel, van Niekerk, Lood, Paul, Steffanie, Spinner, Aviv, Rollins, Nathan, Shaw, Ada, Weitzman, Ruben, Frazer, Jonathan, Dias, Mafalda, Franceschi, Dinko, Orenbuch, Rose, Gal, Yarin, Marks, Debora

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Additional file 2 of Pervasiveness of HLA allele-specific expression loss across tumor types von Filip, Ioan, Wang, Anqi, Kravets, Oleksandr, Orenbuch, Rose, Zhao, Junfei, Perea-Chamblee, Tomin E., Manji, Gulam A., López de Maturana, Evangelina, Malats, Núria, Olive, Kenneth P., Rabadan, Raul

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Guidelines for releasing a variant effect predictor von Livesey, Benjamin J, Badonyi, Mihaly, Dias, Mafalda, Frazer, Jonathan, Kumar, Sushant, Lindorff-Larsen, Kresten, McCandlish, David M, Rose Orenbuch, Shearer, Courtney A, Muffley, Lara, eman, Julia, Glazer, Andrew M, Lehner, Ben, Marks, Debora S, Roth, Frederick P, Rubin, Alan F, Starita, Lea M, Marsh, Joseph A

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