Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i von Saltykova, Assia, Wuyts, Véronique, Mattheus, Wesley, Bertrand, Sophie, Roosens, Nancy H C, Marchal, Kathleen, De Keersmaecker, Sigrid C J

Volltext

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria von Gand, Mathieu, Bloemen, Bram, Vanneste, Kevin, Roosens, Nancy H C, De Keersmaecker, Sigrid C J

Volltext

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance von Bloemen, Bram, Gand, Mathieu, Vanneste, Kevin, Marchal, Kathleen, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J.

Volltext

Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020 von Van Goethem, Nina, Van Den Bossche, An, Ceyssens, Pieter-Jan, Lajot, Adrien, Coucke, Wim, Vernelen, Kris, Roosens, Nancy H C, De Keersmaecker, Sigrid C J, Van Cauteren, Dieter, Mattheus, Wesley

Volltext

A systematic review and meta-analysis of host genetic factors associated with influenza severity von Van Goethem, Nina, Danwang, Célestin, Bossuyt, Nathalie, Van Oyen, Herman, Roosens, Nancy H C, Robert, Annie

Volltext

Status and potential of bacterial genomics for public health practice: a scoping review von Van Goethem, Nina, Descamps, Tine, Devleesschauwer, Brecht, Roosens, Nancy H C, Boon, Nele A M, Van Oyen, Herman, Robert, Annie

Volltext

Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection von Bogaerts, Bert, Van Braekel, Julien, Van Uffelen, Alexander, D'aes, Jolien, Godfroid, Maxime, Delcourt, Thomas, Kelchtermans, Michael, Milis, Kato, Goeders, Nathalie, De Keersmaecker, Sigrid C J, Roosens, Nancy H C, Winand, Raf, Vanneste, Kevin

Volltext

Development of Digital Droplet PCR Targeting the Influenza H3N2 Oseltamivir-Resistant E119V Mutation and Its Performance through the Use of Reverse Genetics Mutants von Van Poelvoorde, Laura A E, Dufrasne, François E, Van Gucht, Steven, Saelens, Xavier, Roosens, Nancy H C

Volltext

MLVA as a tool for public health surveillance of human Salmonella Typhimurium: prospective study in Belgium and evaluation of MLVA loci stability von Wuyts, Véronique, Mattheus, Wesley, De Laminne de Bex, Guillaume, Wildemauwe, Christa, Roosens, Nancy H C, Marchal, Kathleen, De Keersmaecker, Sigrid C J, Bertrand, Sophie

Volltext

Development of a multiplex mass spectrometry method for simultaneous quantification of urinary proteins related to respiratory health von Nauwelaerts, Sarah J. D., Roosens, Nancy H. C., Bernard, Alfred, De Keersmaecker, Sigrid C. J., De Cremer, Koen

Volltext

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO von Fraiture, Marie-Alice, Saltykova, Assia, Hoffman, Stefan, Winand, Raf, Deforce, Dieter, Vanneste, Kevin, De Keersmaecker, Sigrid C. J., Roosens, Nancy H. C.

Volltext

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling von Buytaers, Florence E, Verhaegen, Bavo, Van Nieuwenhuysen, Tom, Roosens, Nancy H C, Vanneste, Kevin, Marchal, Kathleen, De Keersmaecker, Sigrid C J

Volltext

Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing von Van Poelvoorde, Laura A E, Delcourt, Thomas, Coucke, Wim, Herman, Philippe, De Keersmaecker, Sigrid C J, Saelens, Xavier, Roosens, Nancy H C, Vanneste, Kevin

Volltext

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies von Buytaers, Florence E, Saltykova, Assia, Denayer, Sarah, Verhaegen, Bavo, Vanneste, Kevin, Roosens, Nancy H C, Piérard, Denis, Marchal, Kathleen, De Keersmaecker, Sigrid C J

Volltext

TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION S... von Winand, Raf, Bogaerts, Bert, Hoffman, Stefan, Lefevre, Loïc, Delvoye, Maud, Braekel, Julien Van, Fu, Qiang, Roosens, Nancy Hc, Keersmaecker, Sigrid Cj De, Vanneste, Kevin

Volltext

multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium von Wuyts, Véronique, Mattheus, Wesley, Roosens, Nancy H. C, Marchal, Kathleen, Bertrand, Sophie, De Keersmaecker, Sigrid C. J

Volltext

Evaluation of the added value of viral genomic information for predicting severity of influenza infection von Van Goethem, Nina, Robert, Annie, Bossuyt, Nathalie, Van Poelvoorde, Laura A E, Quoilin, Sophie, De Keersmaecker, Sigrid C J, Devleesschauwer, Brecht, Thomas, Isabelle, Vanneste, Kevin, Roosens, Nancy H C, Van Oyen, Herman

Volltext

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Nei... von Bogaerts, Bert, Winand, Raf, Fu, Qiang, Van Braekel, Julien, Ceyssens, Pieter-Jan, Mattheus, Wesley, Bertrand, Sophie, De Keersmaecker, Sigrid C J, Roosens, Nancy H C, Vanneste, Kevin

Volltext

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices von Nouws, Stéphanie, Verhaegen, Bavo, Denayer, Sarah, Crombé, Florence, Piérard, Denis, Bogaerts, Bert, Vanneste, Kevin, Marchal, Kathleen, Roosens, Nancy H C, De Keersmaecker, Sigrid C J

Volltext

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities von Van Uffelen, Alexander, Posadas, Andrés, Roosens, Nancy H. C., Marchal, Kathleen, De Keersmaecker, Sigrid C. J., Vanneste, Kevin

Volltext