Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes von Chun, Jongsik, Oren, Aharon, Ventosa, Antonio, Christensen, Henrik, Arahal, David Ruiz, da Costa, Milton S, Rooney, Alejandro P, Yi, Hana, Xu, Xue-Wei, De Meyer, Sofie, Trujillo, Martha E

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Iturinic Lipopeptide Diversity in the Bacillus subtilis Species Group - Important Antifungals for Plant Disease Biocontrol Applications von Dunlap, Christopher A, Bowman, Michael J, Rooney, Alejandro P

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Concerted and Birth-and-Death Evolution of Multigene Families von Nei, Masatoshi, Rooney, Alejandro P

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Draconibacterium orientale gen. nov., sp. nov., isolated from two distinct marine environments, and proposal of Draconibacteriaceae fam. nov von Du, Zong-Jun, Wang, Ying, Dunlap, Christopher, Rooney, Alejandro P, Chen, Guan-Jun

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Entomopathogenic fungal infection leads to temporospatial modulation of the mosquito immune system von Ramirez, José L, Dunlap, Christopher A, Muturi, Ephantus J, Barletta, Ana B F, Rooney, Alejandro P

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Fusarium Pathogenomics von Ma, Li-Jun, Geiser, David M, Proctor, Robert H, Rooney, Alejandro P, O'Donnell, Kerry, Trail, Frances, Gardiner, Donald M, Manners, John M, Kazan, Kemal

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Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus von Dunlap, Christopher A, Kim, Soo-Jin, Kwon, Soon-Wo, Rooney, Alejandro P

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Midgut fungal and bacterial microbiota of Aedes triseriatus and Aedes japonicus shift in response to La Crosse virus infection von Muturi, Ephantus J., Bara, Jeffrey J., Rooney, Alejandro P., Hansen, Allison K.

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An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminearum in North America von Ward, Todd J., Clear, Randall M., Rooney, Alejandro P., O’Donnell, Kerry, Gaba, Don, Patrick, Susan, Starkey, David E., Gilbert, Jeannie, Geiser, David M., Nowicki, Tom W.

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Phylogenetic analysis of Bacillus subtilis strains applicable to natto (fermented soybean) production von Kubo, Yuji, Rooney, Alejandro P, Tsukakoshi, Yoshiki, Nakagawa, Rikio, Hasegawa, Hiromasa, Kimura, Keitarou

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The Aedes aegypti IMD pathway is a critical component of the mosquito antifungal immune response von Ramirez, José L., Muturi, Ephantus J., Barletta, Ana B.F., Rooney, Alejandro P.

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Strain-specific pathogenicity and subversion of phenoloxidase activity in the mosquito Aedes aegypti by members of the fungal entomopathogenic genus Isaria von Ramirez, José L., Muturi, Ephantus J., Dunlap, Christopher, Rooney, Alejandro P.

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Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria von O’Donnell, Kerry, Rooney, Alejandro P., Proctor, Robert H., Brown, Daren W., McCormick, Susan P., Ward, Todd J., Frandsen, Rasmus J.N., Lysøe, Erik, Rehner, Stephen A., Aoki, Takayuki, Robert, Vincent A.R.G., Crous, Pedro W., Groenewald, Johannes Z., Kang, Seogchan, Geiser, David M.

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Mosquito microbiota cluster by host sampling location von Muturi, Ephantus J, Lagos-Kutz, Doris, Dunlap, Christopher, Ramirez, Jose L, Rooney, Alejandro P, Hartman, Glen L, Fields, Christopher J, Rendon, Gloria, Kim, Chang-Hyun

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Multigene molecular phylogenetics reveals true morels (Morchella) are especially species-rich in China von Du, Xi-Hui, Zhao, Qi, O’Donnell, Kerry, Rooney, Alejandro P., Yang, Zhu L.

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Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics von Koeppel, Alexander, Perry, Elizabeth B, Sikorski, Johannes, Krizanc, Danny, Warner, Andrew, Ward, David M, Rooney, Alejandro P, Brambilla, Evelyne, Connor, Nora, Ratcliff, Rodney M, Nevo, Eviatar, Cohan, Frederick M

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Molecular Genetics and Evolution of Pheromone Biosynthesis in Lepidoptera von Roelofs, Wendell L., Rooney, Alejandro P.

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Phylogeny and historical biogeography of true morels (Morchella) reveals an early Cretaceous origin and high continental endemism and provincialism in the Holarctic von O’Donnell, Kerry, Rooney, Alejandro P., Mills, Gary L., Kuo, Michael, Weber, Nancy S., Rehner, Stephen A.

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An inordinate fondness for Fusarium: Phylogenetic diversity of fusaria cultivated by ambrosia beetles in the genus Euwallacea on avocado and other plant hosts von Kasson, Matthew T., O’Donnell, Kerry, Rooney, Alejandro P., Sink, Stacy, Ploetz, Randy C., Ploetz, Jill N., Konkol, Joshua L., Carrillo, Daniel, Freeman, Stanley, Mendel, Zvi, Smith, Jason A., Black, Adam W., Hulcr, Jiri, Bateman, Craig, Stefkova, Kristyna, Campbell, Paul R., Geering, Andrew D.W., Dann, Elizabeth K., Eskalen, Akif, Mohotti, Keerthi, Short, Dylan P.G., Aoki, Takayuki, Fenstermacher, Kristi A., Davis, Donald D., Geiser, David M.

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Discordant phylogenies suggest repeated host shifts in the Fusarium–Euwallacea ambrosia beetle mutualism von O’Donnell, Kerry, Sink, Stacy, Libeskind-Hadas, Ran, Hulcr, Jiri, Kasson, Matthew T., Ploetz, Randy C., Konkol, Joshua L., Ploetz, Jill N., Carrillo, Daniel, Campbell, Alina, Duncan, Rita E., Liyanage, Pradeepa N.H., Eskalen, Akif, Na, Francis, Geiser, David M., Bateman, Craig, Freeman, Stanley, Mendel, Zvi, Sharon, Michal, Aoki, Takayuki, Cossé, Allard A., Rooney, Alejandro P.

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