Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape von O’Malley, Ronan C., Huang, Shao-shan Carol, Song, Liang, Lewsey, Mathew G., Bartlett, Anna, Nery, Joseph R., Galli, Mary, Gallavotti, Andrea, Ecker, Joseph R.

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Mapping genome-wide transcription-factor binding sites using DAP-seq von Bartlett, Anna, O'Malley, Ronan C, Huang, Shao-shan Carol, Galli, Mary, Nery, Joseph R, Gallavotti, Andrea, Ecker, Joseph R

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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types von Shulse, Christine N., Cole, Benjamin J., Ciobanu, Doina, Lin, Junyan, Yoshinaga, Yuko, Gouran, Mona, Turco, Gina M., Zhu, Yiwen, O’Malley, Ronan C., Brady, Siobhan M., Dickel, Diane E.

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The value of domestic building energy efficiency — evidence from Ireland von Hyland, Marie, Lyons, Ronan C., Lyons, Seán

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Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis von Lister, Ryan, O'Malley, Ronan C., Tonti-Filippini, Julian, Gregory, Brian D., Berry, Charles C., Millar, A. Harvey, Ecker, Joseph R.

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Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants von Schmitz, Robert J., Schultz, Matthew D., Lewsey, Mathew G., O'Malley, Ronan C., Urich, Mark A., Libiger, Ondrej, Schork, Nicholas J., Ecker, Joseph R.

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Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape von O’Malley, Ronan C., Huang, Shao-shan Carol, Song, Liang, Lewsey, Mathew G., Bartlett, Anna, Nery, Joseph R., Galli, Mary, Gallavotti, Andrea, Ecker, Joseph R.

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Persistence and plasticity in bacterial gene regulation von Baumgart, Leo A., Lee, Ji Eun, Salamov, Asaf, Dilworth, David J., Na, Hyunsoo, Mingay, Matthew, Blow, Matthew J., Zhang, Yu, Yoshinaga, Yuko, Daum, Chris G., O’Malley, Ronan C.

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Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in Panicum hallii von Weng, Xiaoyu, Song, Haili, Sreedasyam, Avinash, Haque, Taslima, Zhang, Li, Chen, Cindy, Yoshinaga, Yuko, Williams, Melissa, O’Malley, Ronan C, Grimwood, Jane, Schmutz, Jeremy, Juenger, Thomas E

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Linking genotype to phenotype using the Arabidopsis unimutant collection von O'Malley, Ronan C, Ecker, Joseph R

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The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram von Prigge, Michael J, Greenham, Kathleen, Zhang, Yi, Santner, Aaron, Castillejo, Cristina, Mutka, Andrew M, O’Malley, Ronan C, Ecker, Joseph R, Kunkel, Barbara N, Estelle, Mark

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Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses von Varoquaux, Nelle, Cole, Benjamin, Gao, Cheng, Pierroz, Grady, Baker, Christopher R., Patel, Dhruv, Madera, Mary, Jeffers, Tim, Hollingsworth, Joy, Sievert, Julie, Yoshinaga, Yuko, Owiti, Judith A., Singan, Vasanth R., DeGraaf, Stephanie, Xu, Ling, Blow, Matthew J., Harrison, Maria J., Visel, Axel, Jansson, Christer, Niyogi, Krishna K., Hutmacher, Robert, Coleman-Derr, Devin, O’Malley, Ronan C., Taylor, John W., Dahlberg, Jeffery, Vogel, John P., Lemaux, Peggy G., Purdom, Elizabeth

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Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa von Fischer, Monika S, Wu, Vincent W, Lee, Ji E, O'Malley, Ronan C, Glass, N Louise

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Social housing and the spread of population: Evidence from twentieth century Ireland von de Bromhead, Alan, Lyons, Ronan C.

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The Value of a Sea View: Hedonic Estimates Using 3D Simulation and Natural Language Processing von Gillespie, Tom, Lyons, Ronan C, Hynes, Stephen

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Discovery of a chemical probe for PRDM9 von Allali-Hassani, Abdellah, Szewczyk, Magdalena M., Ivanochko, Danton, Organ, Shawna L., Bok, Jabez, Ho, Jessica Sook Yuin, Gay, Florence P. H., Li, Fengling, Blazer, Levi, Eram, Mohammad S., Halabelian, Levon, Dilworth, David, Luciani, Genna M., Lima-Fernandes, Evelyne, Wu, Qin, Loppnau, Peter, Palmer, Nathan, Talib, S. Zakiah A., Brown, Peter J., Schapira, Matthieu, Kaldis, Philipp, O’Hagan, Ronan C., Guccione, Ernesto, Barsyte-Lovejoy, Dalia, Arrowsmith, Cheryl H., Sanders, John M., Kattar, Solomon D., Bennett, D. Jonathan, Nicholson, Benjamin, Vedadi, Masoud

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The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus von Wu, Vincent W., Thieme, Nils, Huberman, Lori B., Dietschmann, Axel, Kowbel, David J., Lee, Juna, Calhoun, Sara, Singan, Vasanth R., Lipzen, Anna, Xiong, Yi, Monti, Remo, Blow, Matthew J., O’Malley, Ronan C., Grigoriev, Igor V., Benz, J. Philipp, Glass, N. Louise

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Increasing ascorbate levels in crops to enhance human nutrition and plant abiotic stress tolerance von Macknight, Richard C, Laing, William A, Bulley, Sean M, Broad, Ronan C, Johnson, Alexander AT, Hellens, Roger P

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Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication von Panchy, Nicholas L, Azodi, Christina B, Winship, Eamon F, O'Malley, Ronan C, Shiu, Shin-Han

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Manipulation of Ascorbate Biosynthetic, Recycling, and Regulatory Pathways for Improved Abiotic Stress Tolerance in Plants von Broad, Ronan C, Bonneau, Julien P, Hellens, Roger P, Johnson, Alexander A T

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