High-definition spatial transcriptomics for in situ tissue profiling von Vickovic, Sanja, Eraslan, Gökcen, Salmén, Fredrik, Klughammer, Johanna, Stenbeck, Linnea, Schapiro, Denis, Äijö, Tarmo, Bonneau, Richard, Bergenstråhle, Ludvig, Navarro, José Fernandéz, Gould, Joshua, Griffin, Gabriel K., Borg, Åke, Ronaghi, Mostafa, Frisén, Jonas, Lundeberg, Joakim, Regev, Aviv, Ståhl, Patrik L.

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In vitro, long-range sequence information for de novo genome assembly via transposase contiguity von Adey, Andrew, Kitzman, Jacob O, Burton, Joshua N, Daza, Riza, Kumar, Akash, Christiansen, Lena, Ronaghi, Mostafa, Amini, Sasan, Gunderson, Kevin L, Steemers, Frank J, Shendure, Jay

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mRNA-Seq of single prostate cancer circulating tumor cells reveals recapitulation of gene expression and pathways found in prostate cancer von Cann, Gordon M, Gulzar, Zulfiqar G, Cooper, Samantha, Li, Robin, Luo, Shujun, Tat, Mai, Stuart, Sarah, Schroth, Gary, Srinivas, Sandhya, Ronaghi, Mostafa, Brooks, James D, Talasaz, Amirali H

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Sequencing and Analysis of Strobilanthes cusia (Nees) Kuntze Chloroplast Genome Revealed the Rare Simultaneous Contraction and Expansion of the Inverted Repeat Region in Angiosperm von Chen, Haimei, Shao, Junjie, Zhang, Hui, Jiang, Mei, Huang, Linfang, Zhang, Zhao, Yang, Dan, He, Molly, Ronaghi, Mostafa, Luo, Xi, Sun, Botao, Wu, Wuwei, Liu, Chang

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Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube von Zhang, Fan, Christiansen, Lena, Thomas, Jerushah, Pokholok, Dmitry, Jackson, Ros, Morrell, Natalie, Zhao, Yannan, Wiley, Melissa, Welch, Emily, Jaeger, Erich, Granat, Ana, Norberg, Steven J, Halpern, Aaron, C Rogert, Maria, Ronaghi, Mostafa, Shendure, Jay, Gormley, Niall, Gunderson, Kevin L, Steemers, Frank J

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Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems von Parameswaran, Poornima, Sklan, Ella, Wilkins, Courtney, Burgon, Trever, Samuel, Melanie A, Lu, Rui, Ansel, K Mark, Heissmeyer, Vigo, Einav, Shirit, Jackson, William, Doukas, Tammy, Paranjape, Suman, Polacek, Charlotta, dos Santos, Flavia Barreto, Jalili, Roxana, Babrzadeh, Farbod, Gharizadeh, Baback, Grimm, Dirk, Kay, Mark, Koike, Satoshi, Sarnow, Peter, Ronaghi, Mostafa, Ding, Shou-Wei, Harris, Eva, Chow, Marie, Diamond, Michael S, Kirkegaard, Karla, Glenn, Jeffrey S, Fire, Andrew Z

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LTBP2 mutations cause Weill-Marchesani and Weill-Marchesani-like syndrome and affect disruptions in the extracellular matrix von Haji-Seyed-Javadi, Ramona, Jelodari-Mamaghani, Sahar, Paylakhi, Seyed Hassan, Yazdani, Shahin, Nilforushan, Naveed, Fan, Jian-Bing, Klotzle, Brandy, Mahmoudi, Mohammad Jafar, Ebrahimian, Mohammad Jafar, Chelich, Noori, Taghiabadi, Ehsan, Kamyab, Kambiz, Boileau, Catherine, Paisan-Ruiz, Coro, Ronaghi, Mostafa, Elahi, Elahe

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Bacterial flora-typing with targeted, chip-based Pyrosequencing von Sundquist, Andreas, Bigdeli, Saharnaz, Jalili, Roxana, Druzin, Maurice L, Waller, Sarah, Pullen, Kristin M, El-Sayed, Yasser Y, Taslimi, M Mark, Batzoglou, Serafim, Ronaghi, Mostafa

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Prediction of Protein Orientation upon Immobilization on Biological and Nonbiological Surfaces von Talasaz, AmirAli H., Nemat-Gorgani, Mohsen, Liu, Yang, Ståhl, Patrik, Dutton, Robert W., Ronaghi, Mostafa, Davis, Ronald W.

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Pyrosequencing™: An accurate detection platform for single nucleotide polymorphisms von Fakhrai-Rad, Hossein, Pourmand, Nader, Ronaghi, Mostafa

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Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance von Wang, Chunlin, Mitsuya, Yumi, Gharizadeh, Baback, Ronaghi, Mostafa, Shafer, Robert W

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High throughput automated allele frequency estimation by pyrosequencing von Doostzadeh, Julie, Shokralla, Shadi, Absalan, Farnaz, Jalili, Roxana, Mohandessi, Sharareh, Langston, James W, Davis, Ronald W, Ronaghi, Mostafa, Gharizadeh, Baback

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Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing von Amini, Sasan, Pushkarev, Dmitry, Christiansen, Lena, Kostem, Emrah, Royce, Tom, Turk, Casey, Pignatelli, Natasha, Adey, Andrew, Kitzman, Jacob O, Vijayan, Kandaswamy, Ronaghi, Mostafa, Shendure, Jay, Gunderson, Kevin L, Steemers, Frank J

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pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing von Parameswaran, Poornima, Jalili, Roxana, Tao, Li, Shokralla, Shadi, Gharizadeh, Baback, Ronaghi, Mostafa, Fire, Andrew Z

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Mutation detection by pyrosequencing: sequencing of exons 5–8 of the p53 tumor suppressor gene von Garcia, Carlos A, Ahmadian, Afshin, Gharizadeh, Baback, Lundeberg, Joakim, Ronaghi, Mostafa, Nyrén, Pål

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Subangstrom single-molecule measurements of motor proteins using a nanopore von Derrington, Ian M, Craig, Jonathan M, Stava, Eric, Laszlo, Andrew H, Ross, Brian C, Brinkerhoff, Henry, Nova, Ian C, Doering, Kenji, Tickman, Benjamin I, Ronaghi, Mostafa, Mandell, Jeffrey G, Gunderson, Kevin L, Gundlach, Jens H

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The power of synthetic biology for bioproduction, remediation and pollution control: The UN's Sustainable Development Goals will inevitably require the application of molecular bio... von de Lorenzo, Víctor, Prather, Kristala LJ, Chen, Guo‐Qiang, O'Day, Elizabeth, von Kameke, Conrad, Oyarzún, Diego A, Hosta‐Rigau, Leticia, Alsafar, Habiba, Cao, Cong, Ji, Weizhi, Okano, Hideyuki, Roberts, Richard J, Ronaghi, Mostafa, Yeung, Karen, Zhang, Feng, Lee, Sang Yup

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Genetic variation analyses by Pyrosequencing von Langaee, T, Ronaghi, M

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Improved Performance of Pyrosequencing Using Single-Stranded DNA-Binding Protein von Ronaghi, Mostafa

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A High-Resolution Low-Power Incremental \Sigma\Delta ADC With Extended Range for Biosensor Arrays von Agah, Ali, Vleugels, Katelijn, Griffin, Peter B, Ronaghi, Mostafa, Plummer, James D, Wooley, Bruce A

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