Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale von Schmidt, Thomas S B, Matias Rodrigues, João F, von Mering, Christian

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Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity von Maistrenko, Oleksandr M., Mende, Daniel R., Luetge, Mechthild, Hildebrand, Falk, Schmidt, Thomas S. B., Li, Simone S., Rodrigues, João F. Matias, von Mering, Christian, Pedro Coelho, Luis, Huerta-Cepas, Jaime, Sunagawa, Shinichi, Bork, Peer

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Genotype networks in metabolic reaction spaces von Samal, Areejit, Matias Rodrigues, João F, Jost, Jürgen, Martin, Olivier C, Wagner, Andreas

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Evolutionary plasticity and innovations in complex metabolic reaction networks von Matias Rodrigues, João F, Wagner, Andreas

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HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences von Matias Rodrigues, João F, von Mering, Christian

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Differences in cell division rates drive the evolution of terminal differentiation in microbes von Rodrigues, João F Matias, Rankin, Daniel J, Rossetti, Valentina, Wagner, Andreas, Bagheri, Homayoun C

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MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis von Matias Rodrigues, João F, Schmidt, Thomas S B, Tackmann, Janko, von Mering, Christian

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The Evolution of Ecological Diversity in Acidobacteria von Sikorski, Johannes, Baumgartner, Vanessa, Birkhofer, Klaus, Boeddinghaus, Runa S, Bunk, Boyke, Fischer, Markus, Fösel, Bärbel U, Friedrich, Michael W, Göker, Markus, Hölzel, Norbert, Huang, Sixing, Huber, Katharina J, Kandeler, Ellen, Klaus, Valentin H, Kleinebecker, Till, Marhan, Sven, von Mering, Christian, Oelmann, Yvonne, Prati, Daniel, Regan, Kathleen M, Richter-Heitmann, Tim, Rodrigues, João F Matias, Schmitt, Barbara, Schöning, Ingo, Schrumpf, Marion, Schurig, Elisabeth, Solly, Emily F, Wolters, Volkmar, Overmann, Jörg

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Suppression of the Escherichia coli dnaA46 mutation by changes in the activities of the pyruvate-acetate node links DNA replication regulation to central carbon metabolism von Tymecka-Mulik, Joanna, Boss, Lidia, Maciąg-Dorszyńska, Monika, Matias Rodrigues, João F, Gaffke, Lidia, Wosinski, Anna, Cech, Grzegorz M, Szalewska-Pałasz, Agnieszka, Węgrzyn, Grzegorz, Glinkowska, Monika

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Limits to robustness and reproducibility in the demarcation of operational taxonomic units von Schmidt, Thomas S. B., Matias Rodrigues, João F., von Mering, Christian

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Pathogens and host immunity in the ancient human oral cavity von Warinner, Christina, Rodrigues, João F Matias, Vyas, Rounak, Trachsel, Christian, Shved, Natallia, Grossmann, Jonas, Radini, Anita, Hancock, Y, Tito, Raul Y, Fiddyment, Sarah, Speller, Camilla, Hendy, Jessica, Charlton, Sophy, Luder, Hans Ulrich, Salazar-García, Domingo C, Eppler, Elisabeth, Seiler, Roger, Hansen, Lars H, Castruita, José Alfredo Samaniego, Barkow-Oesterreicher, Simon, Teoh, Kai Yik, Kelstrup, Christian D, Olsen, Jesper V, Nanni, Paolo, Kawai, Toshihisa, Willerslev, Eske, von Mering, Christian, Lewis, Cecil M, Collins, Matthew J, Gilbert, M Thomas P, Rühli, Frank, Cappellini, Enrico

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Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments von Gable, Annika L, Szklarczyk, Damian, Lyon, David, Matias Rodrigues, João F, von Mering, Christian

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Genotype networks, innovation, and robustness in sulfur metabolism von Matias Rodrigues, João F, Wagner, Andreas

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The Microbiome Forensics Database UZH von Arora, Natasha, Matias Rodrigues, João F., Swayambhu, Meghna, Witlox, Pim

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Correction: Differences in Cell Division Rates Drive the Evolution of Terminal Differentiation in Microbes von Matias Rodrigues, João F., Rankin, Daniel J., Rossetti, Valentina, Wagner, Andreas, Bagheri, Homayoun C.

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The establishment of communication systems depends on the scale of competition von dos Santos, Miguel, Matias Rodrigues, João F, Wedekind, Claus, Rankin, Daniel J

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Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments von Gable, Annika L, Szklarczyk, Damian, Lyon, David, Matias Rodrigues, João F, von Mering, Christian

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HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences von Matias Rodrigues, João F, von Mering, Christian

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MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis von Matias Rodrigues, João F, Schmidt, Thomas Sebastian Benedikt, Tackmann, Janko, von Mering, Christian

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The Evolution of Ecological Diversity in Acidobacteria von Sikorski, Johannes, Baumgartner, Vanessa, Birkhofer, Klaus, Boeddinghaus, Runa S, Bunk, Boyke, Fischer, Markus, Fösel, Bärbel U, Friedrich, Michael W, Göker, Markus, Hölzel, Norbert, Huang, Sixing, Huber, Katharina J, Kandeler, Ellen, Klaus, Valentin H, Kleinebecker, Till, Marhan, Sven, von Mering, Christian, Oelmann, Yvonne, Prati, Daniel, Regan, Kathleen M, Richter-Heitmann, Tim, Rodrigues, João F Matias, Schmitt, Barbara, Schöning, Ingo, Schrumpf, Marion, Schurig, Elisabeth, Solly, Emily F, Wolters, Volkmar, Overmann, Jörg

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