DDMut: predicting effects of mutations on protein stability using deep learning von Zhou, Yunzhuo, Pan, Qisheng, Pires, Douglas E V, Rodrigues, Carlos H M, Ascher, David B

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DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations von Rodrigues, Carlos H.M., Pires, Douglas E.V., Ascher, David B.

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Structure guided prediction of Pyrazinamide resistance mutations in pncA von Karmakar, Malancha, Rodrigues, Carlos H. M., Horan, Kristy, Denholm, Justin T., Ascher, David B.

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Empirical ways to identify novel Bedaquiline resistance mutations in AtpE von Karmakar, Malancha, Rodrigues, Carlos H M, Holt, Kathryn E, Dunstan, Sarah J, Denholm, Justin, Ascher, David B

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DDMut-PPI: predicting effects of mutations on protein-protein interactions using graph-based deep learning von Zhou, Yunzhuo, Myung, YooChan, Rodrigues, Carlos H M, Ascher, David B

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mmCSM-PPI: predicting the effects of multiple point mutations on protein–protein interactions von Rodrigues, Carlos H M, Pires, Douglas E V, Ascher, David B

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A structural biology community assessment of AlphaFold2 applications von Akdel, Mehmet, Pires, Douglas E. V., Pardo, Eduard Porta, Jänes, Jürgen, Zalevsky, Arthur O., Mészáros, Bálint, Bryant, Patrick, Good, Lydia L., Laskowski, Roman A., Pozzati, Gabriele, Shenoy, Aditi, Zhu, Wensi, Kundrotas, Petras, Serra, Victoria Ruiz, Rodrigues, Carlos H. M., Dunham, Alistair S., Burke, David, Borkakoti, Neera, Velankar, Sameer, Frost, Adam, Basquin, Jérôme, Lindorff-Larsen, Kresten, Bateman, Alex, Kajava, Andrey V., Valencia, Alfonso, Ovchinnikov, Sergey, Durairaj, Janani, Ascher, David B., Thornton, Janet M., Davey, Norman E., Stein, Amelie, Elofsson, Arne, Croll, Tristan I., Beltrao, Pedro

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Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource von Portelli, Stephanie, Olshansky, Moshe, Rodrigues, Carlos H. M., D’Souza, Elston N., Myung, Yoochan, Silk, Michael, Alavi, Azadeh, Pires, Douglas E. V., Ascher, David B.

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DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability von Rodrigues, Carlos HM, Pires, Douglas EV, Ascher, David B

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CSM-Toxin: A Web-Server for Predicting Protein Toxicity von Morozov, Vladimir, Rodrigues, Carlos H M, Ascher, David B

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pdCSM-PPI: Using Graph-Based Signatures to Identify Protein–Protein Interaction Inhibitors von Rodrigues, Carlos H. M, Pires, Douglas E. V, Ascher, David B

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mCSM-AB2: guiding rational antibody design using graph-based signatures von Myung, Yoochan, Rodrigues, Carlos H M, Ascher, David B, Pires, Douglas E V

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piscesCSM: prediction of anticancer synergistic drug combinations von AlJarf, Raghad, Rodrigues, Carlos H. M., Myung, Yoochan, Pires, Douglas E. V., Ascher, David B.

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mCSM-PPI2: predicting the effects of mutations on protein-protein interactions von Rodrigues, Carlos H M, Myung, Yoochan, Pires, Douglas E V, Ascher, David B

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Author Correction: Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource von Portelli, Stephanie, Olshansky, Moshe, Rodrigues, Carlos H. M., D’Souza, Elston N., Myung, Yoochan, Silk, Michael, Alavi, Azadeh, Pires, Douglas E. V., Ascher, David B.

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mCSM-membrane: predicting the effects of mutations on transmembrane proteins von Pires, Douglas E V, Rodrigues, Carlos H M, Ascher, David B

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CSM‐Potential2: A comprehensive deep learning platform for the analysis of protein interacting interfaces von Rodrigues, Carlos H. M., Ascher, David B.

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Exploring the effects of missense mutations on protein thermodynamics through structure-based approaches: findings from the CAGI6 challenges von Rodrigues, Carlos H M, Portelli, Stephanie, Ascher, David B

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CSM-Potential: mapping protein interactions and biological ligands in 3D space using geometric deep learning von Rodrigues, Carlos H M, Ascher, David B

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EFG‐CS: Predicting chemical shifts from amino acid sequences with protein structure prediction using machine learning and deep learning models von Gu, Xiaotong, Myung, Yoochan, Rodrigues, Carlos H. M., Ascher, David B.

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