Clinical potential of mass spectrometry-based proteogenomics von Zhang, Bing, Whiteaker, Jeffrey R., Hoofnagle, Andrew N., Baird, Geoffrey S., Rodland, Karin D., Paulovich, Amanda G.

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Inhibition of interleukin-1 receptor-associated kinase-1 is a therapeutic strategy for acute myeloid leukemia subtypes von Hosseini, Mona M., Kurtz, Stephen E., Abdelhamed, Sherif, Mahmood, Shawn, Davare, Monika A., Kaempf, Andy, Elferich, Johannes, McDermott, Jason E., Liu, Tao, Payne, Samuel H., Shinde, Ujwal, Rodland, Karin D., Mori, Motomi, Druker, Brian J., Singer, Jack W., Agarwal, Anupriya

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An Integrative Analysis of Tumor Proteomic and Phosphoproteomic Profiles to Examine the Relationships Between Kinase Activity and Phosphorylation von Arshad, Osama A., Danna, Vincent, Petyuk, Vladislav A., Piehowski, Paul D., Liu, Tao, Rodland, Karin D., McDermott, Jason E.

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CD63-mediated cloaking of VEGF in small extracellular vesicles contributes to anti-VEGF therapy resistance von Ma, Shaolin, Mangala, Lingegowda S., Hu, Wen, Bayaktar, Emine, Yokoi, Akira, Hu, Wei, Pradeep, Sunila, Lee, Sanghoon, Piehowski, Paul D., Villar-Prados, Alejandro, Wu, Sherry Y., McGuire, Michael H., Lara, Olivia D., Rodriguez-Aguayo, Cristian, LaFargue, Christopher J., Jennings, Nicholas B., Rodland, Karin D., Liu, Tao, Kundra, Vikas, Ram, Prahlad T., Ramakrishnan, Sundaram, Lopez-Berestein, Gabriel, Coleman, Robert L., Sood, Anil K.

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Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data von Woo, Sunghee, Cha, Seong Won, Na, Seungjin, Guest, Clark, Liu, Tao, Smith, Richard D., Rodland, Karin D., Payne, Samuel, Bafna, Vineet

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A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics von Tsai, Chia-Feng, Wang, Yi-Ting, Hsu, Chuan-Chih, Kitata, Reta Birhanu, Chu, Rosalie K., Velickovic, Marija, Zhao, Rui, Williams, Sarah M., Chrisler, William B., Jorgensen, Marda L., Moore, Ronald J., Zhu, Ying, Rodland, Karin D., Smith, Richard D., Wasserfall, Clive H., Shi, Tujin, Liu, Tao

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Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues von Zhou, Jian-Ying, Chen, Lijun, Zhang, Bai, Tian, Yuan, Liu, Tao, Thomas, Stefani N, Chen, Li, Schnaubelt, Michael, Boja, Emily, Hiltke, Tara, Kinsinger, Christopher R, Rodriguez, Henry, Davies, Sherri R, Li, Shunqiang, Snider, Jacqueline E, Erdmann-Gilmore, Petra, Tabb, David L, Townsend, R. Reid, Ellis, Matthew J, Rodland, Karin D, Smith, Richard D, Carr, Steven A, Zhang, Zhen, Chan, Daniel W, Zhang, Hui

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Residual tissue repositories as a resource for population-based cancer proteomic studies von Piehowski, Paul D, Petyuk, Vladislav A, Sontag, Ryan L, Gritsenko, Marina A, Weitz, Karl K, Fillmore, Thomas L, Moon, Jamie, Makhlouf, Hala, Chuaqui, Rodrigo F, Boja, Emily S, Rodriguez, Henry, Lee, Jerry S H, Smith, Richard D, Carrick, Danielle M, Liu, Tao, Rodland, Karin D

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Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH von Hutchinson-Bunch, Chelsea, Sanford, James A, Hansen, Joshua R, Gritsenko, Marina A, Rodland, Karin D, Piehowski, Paul D, Qian, Wei-Jun, Adkins, Joshua N

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A prognostic risk model for glioma patients by systematic evaluation of genomic variations von Zhang, Baifeng, Wan, Weiqing, Li, Zibo, Gao, Zhixian, Ji, Nan, Xie, Jian, Wang, Junmei, Wang, Bin, Lai-Wan Kwong, Dora, Guan, Xinyuan, Gao, Shengjie, Zhao, Yuanli, Lu, Youyong, Zhang, Liwei, Rodland, Karin D., Tsang, Shirley X.

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Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy von Matsushita, Katsuyuki, Golgotiu, Kirsti, Orton, Daniel J, Smith, Richard D, Rodland, Karin D, Piehowski, Paul D, Hutchens, Michael P

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Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells von Yi, Lian, Tsai, Chia-Feng, Dirice, Ercument, Swensen, Adam C, Chen, Jing, Shi, Tujin, Gritsenko, Marina A, Chu, Rosalie K, Piehowski, Paul D, Smith, Richard D, Rodland, Karin D, Atkinson, Mark A, Mathews, Clayton E, Kulkarni, Rohit N, Liu, Tao, Qian, Wei-Jun

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Introduction to the special issue on Applications of Artificial Intelligence in Biomarker Research von Rodland, Karin D, Webb-Robertson, Bobbie-Jo, Srivastava, Sudhir

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The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance von Joshi, Sunil K., Nechiporuk, Tamilla, Bottomly, Daniel, Piehowski, Paul D., Reisz, Julie A., Pittsenbarger, Janét, Kaempf, Andy, Gosline, Sara J.C., Wang, Yi-Ting, Hansen, Joshua R., Gritsenko, Marina A., Hutchinson, Chelsea, Weitz, Karl K., Moon, Jamie, Cendali, Francesca, Fillmore, Thomas L., Tsai, Chia-Feng, Schepmoes, Athena A., Shi, Tujin, Arshad, Osama A., McDermott, Jason E., Babur, Ozgun, Watanabe-Smith, Kevin, Demir, Emek, D'Alessandro, Angelo, Liu, Tao, Tognon, Cristina E., Tyner, Jeffrey W., McWeeney, Shannon K., Rodland, Karin D., Druker, Brian J., Traer, Elie

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Quantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics von Wang, Hui, Barbieri, Christopher E, He, Jintang, Gao, Yuqian, Shi, Tujin, Wu, Chaochao, Schepmoes, Athena A, Fillmore, Thomas L, Chae, Sung-Suk, Huang, Dennis, Mosquera, Juan Miguel, Qian, Wei-Jun, Smith, Richard D, Srivastava, Sudhir, Kagan, Jacob, Camp, 2nd, David G, Rodland, Karin D, Rubin, Mark A, Liu, Tao

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Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels von Mertins, Philipp, Yang, Feng, Liu, Tao, Mani, D.R., Petyuk, Vladislav A., Gillette, Michael A., Clauser, Karl R., Qiao, Jana W., Gritsenko, Marina A., Moore, Ronald J., Levine, Douglas A., Townsend, Reid, Erdmann-Gilmore, Petra, Snider, Jacqueline E., Davies, Sherri R., Ruggles, Kelly V., Fenyo, David, Kitchens, R. Thomas, Li, Shunqiang, Olvera, Narciso, Dao, Fanny, Rodriguez, Henry, Chan, Daniel W., Liebler, Daniel, White, Forest, Rodland, Karin D., Mills, Gordon B., Smith, Richard D., Paulovich, Amanda G., Ellis, Matthew, Carr, Steven A.

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Mass Spectrometry-Based Proteogenomics: New Therapeutic Opportunities for Precision Medicine von Joshi, Sunil K, Piehowski, Paul, Liu, Tao, Gosline, Sara J.C, McDermott, Jason E, Druker, Brian J, Traer, Elie, Tyner, Jeffrey W, Agarwal, Anupriya, Tognon, Cristina E, Rodland, Karin D

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New Views of Old Proteins: Clarifying the Enigmatic Proteome von Burnum-Johnson, Kristin E., Conrads, Thomas P., Drake, Richard R., Herr, Amy E., Iyengar, Ravi, Kelly, Ryan T., Lundberg, Emma, MacCoss, Michael J., Naba, Alexandra, Nolan, Garry P., Pevzner, Pavel A., Rodland, Karin D., Sechi, Salvatore, Slavov, Nikolai, Spraggins, Jeffrey M., Van Eyk, Jennifer E., Vidal, Marc, Vogel, Christine, Walt, David R., Kelleher, Neil L.

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Internal Standard Triggered-Parallel Reaction Monitoring Mass Spectrometry Enables Multiplexed Quantification of Candidate Biomarkers in Plasma von Kennedy, Jacob J., Whiteaker, Jeffrey R., Ivey, Richard G., Burian, Aura, Chowdhury, Shrabanti, Tsai, Chia-Feng, Liu, Tao, Lin, ChenWei, Murillo, Oscar D., Lundeen, Rachel A., Jones, Lisa A., Gafken, Philip R., Longton, Gary, Rodland, Karin D., Skates, Steven J., Landua, John, Wang, Pei, Lewis, Michael T., Paulovich, Amanda G.

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Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics von Rodland, Karin D, Piehowski, Paul, Smith, Richard D

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