Effects of microbiota-directed foods in gnotobiotic animals and undernourished children von Gehrig, Jeanette L, Venkatesh, Siddarth, Chang, Hao-Wei, Hibberd, Matthew C, Kung, Vanderlene L, Cheng, Jiye, Chen, Robert Y, Subramanian, Sathish, Cowardin, Carrie A, Meier, Martin F, O'Donnell, David, Talcott, Michael, Spears, Larry D, Semenkovich, Clay F, Henrissat, Bernard, Giannone, Richard J, Hettich, Robert L, Ilkayeva, Olga, Muehlbauer, Michael, Newgard, Christopher B, Sawyer, Christopher, Head, Richard D, Rodionov, Dmitry A, Arzamasov, Aleksandr A, Leyn, Semen A, Osterman, Andrei L, Hossain, Md Iqbal, Islam, Munirul, Choudhury, Nuzhat, Sarker, Shafiqul Alam, Huq, Sayeeda, Mahmud, Imteaz, Mostafa, Ishita, Mahfuz, Mustafa, Barratt, Michael J, Ahmed, Tahmeed, Gordon, Jeffrey I

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B Vitamins and Their Role in Immune Regulation and Cancer von Peterson, Christine Tara, Rodionov, Dmitry A, Osterman, Andrei L, Peterson, Scott N

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Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks von Ravcheev, Dmitry A, Godzik, Adam, Osterman, Andrei L, Rodionov, Dmitry A

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Comparative Genomic Reconstruction of Transcriptional Regulatory Networks in Bacteria von Rodionov, Dmitry A

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RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria von Novichkov, Pavel S, Kazakov, Alexey E, Ravcheev, Dmitry A, Leyn, Semen A, Kovaleva, Galina Y, Sutormin, Roman A, Kazanov, Marat D, Riehl, William, Arkin, Adam P, Dubchak, Inna, Rodionov, Dmitry A

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Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization von Zhang, Yan, Rodionov, Dmitry A, Gelfand, Mikhail S, Gladyshev, Vadim N

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Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans von Delannoy-Bruno, Omar, Desai, Chandani, Raman, Arjun S., Chen, Robert Y., Hibberd, Matthew C., Cheng, Jiye, Han, Nathan, Castillo, Juan J., Couture, Garret, Lebrilla, Carlito B., Barve, Ruteja A., Lombard, Vincent, Henrissat, Bernard, Leyn, Semen A., Rodionov, Dmitry A., Osterman, Andrei L., Hayashi, David K., Meynier, Alexandra, Vinoy, Sophie, Kirbach, Kyleigh, Wilmot, Tara, Heath, Andrew C., Klein, Samuel, Barratt, Michael J., Gordon, Jeffrey I.

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Functional Metabolic Map of Faecalibacterium prausnitzii, a Beneficial Human Gut Microbe von Heinken, Almut, Khan, M. Tanweer, Paglia, Giuseppe, Rodionov, Dmitry A, Harmsen, Hermie J. M, Thiele, Ines

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Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health von Coker, Joanna K, Moyne, Oriane, Rodionov, Dmitry A., Zengler, Karsten

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Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities von Romine, Margaret F, Rodionov, Dmitry A, Maezato, Yukari, Osterman, Andrei L, Nelson, William C

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Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions von Eitinger, Thomas, Rodionov, Dmitry A, Grote, Mathias, Schneider, Erwin

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Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome von Rodionov, Dmitry A, Arzamasov, Aleksandr A, Khoroshkin, Matvei S, Iablokov, Stanislav N, Leyn, Semen A, Peterson, Scott N, Novichkov, Pavel S, Osterman, Andrei L

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Reconstruction of xylose utilization pathway and regulons in Firmicutes von Gu, Yang, Ding, Yi, Ren, Cong, Sun, Zhe, Rodionov, Dmitry A, Zhang, Weiwen, Yang, Sheng, Yang, Chen, Jiang, Weihong

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New substrates for TonB-dependent transport: do we only see the ‘tip of the iceberg’? von Schauer, Kristine, Rodionov, Dmitry A., de Reuse, Hilde

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16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootro... von Peterson, Christine Tara, Sharma, Vandana, Iablokov, Stanislav N, Albayrak, Levent, Khanipov, Kamil, Uchitel, Sasha, Chopra, Deepak, Mills, Paul J, Fofanov, Yuriy, Rodionov, Dmitry A, Peterson, Scott N

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B-Vitamin Sharing Promotes Stability of Gut Microbial Communities von Sharma, Vandana, Rodionov, Dmitry A, Leyn, Semen A, Tran, David, Iablokov, Stanislav N, Ding, Hua, Peterson, Daniel A, Osterman, Andrei L, Peterson, Scott N

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Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children von Blanton, Laura V., Charbonneau, Mark R., Salih, Tarek, Barratt, Michael J., Venkatesh, Siddarth, Ilkaveya, Olga, Subramanian, Sathish, Manary, Mark J., Trehan, Indi, Jorgensen, Josh M., Fan, Yue-mei, Henrissat, Bernard, Leyn, Semen A., Rodionov, Dmitry A., Osterman, Andrei L., Maleta, Kenneth M., Newgard, Christopher B., Ashorn, Per, Dewey, Kathryn G., Gordon, Jeffrey I.

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Global transcriptional control by glucose and carbon regulator CcpA in Clostridium difficile von Antunes, Ana, Camiade, Emilie, Monot, Marc, Courtois, Emmanuelle, Barbut, Frédéric, Sernova, Natalia V, Rodionov, Dmitry A, Martin-Verstraete, Isabelle, Dupuy, Bruno

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Comparative Genomics Reveals the Regulatory Complexity of Bifidobacterial Arabinose and Arabino-Oligosaccharide Utilization von Arzamasov, Aleksandr A, van Sinderen, Douwe, Rodionov, Dmitry A

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Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides von Wu, Meng, McNulty, Nathan P., Rodionov, Dmitry A., Khoroshkin, Matvei S., Griffin, Nicholas W., Cheng, Jiye, Latreille, Phil, Kerstetter, Randall A., Terrapon, Nicolas, Henrissat, Bernard, Osterman, Andrei L., Gordon, Jeffrey I.

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