clinker & clustermap.js: automatic generation of gene cluster comparison figures von Gilchrist, Cameron L M, Chooi, Yit-Heng

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CAFE 5 models variation in evolutionary rates among gene families von Mendes, Fábio K, Vanderpool, Dan, Fulton, Ben, Hahn, Matthew W

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pyGenomeTracks: reproducible plots for multivariate genomic datasets von Lopez-Delisle, Lucille, Rabbani, Leily, Wolff, Joachim, Bhardwaj, Vivek, Backofen, Rolf, Gruening, Bjoern, Ramirez, Fidel, Manke, Thomas

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Annotation of biologically relevant ligands in UniProtKB using ChEBI von Coudert, Elisabeth, Gehant, Sebastien, de Castro, Edouard, Pozzato, Monica, Baratin, Delphine, Neto, Teresa, Sigrist, Christian J A, Redaschi, Nicole, Bridge, Alan

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Fast gap-affine pairwise alignment using the wavefront algorithm von Marco-Sola, Santiago, Moure, Juan Carlos, Moreto, Miquel, Espinosa, Antonio

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Attractors for infinite-dimensional non-autonomous dynamical systems von Carvalho, Alexandre

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Subtype-GAN: a deep learning approach for integrative cancer subtyping of multi-omics data von Yang, Hai, Chen, Rui, Li, Dongdong, Wang, Zhe

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ACTINN: automated identification of cell types in single cell RNA sequencing von Ma, Feiyang, Pellegrini, Matteo

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methylclock: a Bioconductor package to estimate DNA methylation age von Pelegí-Sisó, Dolors, de Prado, Paula, Ronkainen, Justiina, Bustamante, Mariona, González, Juan R

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m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human von Song, Bowen, Tang, Yujiao, Chen, Kunqi, Wei, Zhen, Rong, Rong, Lu, Zhiliang, Su, Jionglong, de Magalhães, João Pedro, Rigden, Daniel J, Meng, Jia

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Coolpup.py: versatile pile-up analysis of Hi-C data von Flyamer, Ilya M, Illingworth, Robert S, Bickmore, Wendy A

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plotsr: visualizing structural similarities and rearrangements between multiple genomes von Goel, Manish, Schneeberger, Korbinian

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Mechanisms of plant competition for nutrients, water and light von Craine, Joseph M., Dybzinski, Ray

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Metaviral SPAdes: assembly of viruses from metagenomic data von Antipov, Dmitry, Raiko, Mikhail, Lapidus, Alla, Pevzner, Pavel A

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PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores von Ono, Yukiteru, Asai, Kiyoshi, Hamada, Michiaki

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Inflammation‐driven brain and gut barrier dysfunction in stress and mood disorders von Doney, Ellen, Cadoret, Alice, Dion‐Albert, Laurence, Lebel, Manon, Menard, Caroline, Robinson, Oliver

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Accurate, scalable cohort variant calls using DeepVariant and GLnexus von Yun, Taedong, Li, Helen, Chang, Pi-Chuan, Lin, Michael F, Carroll, Andrew, McLean, Cory Y

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Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis von Zhang, Yang, Liu, Tianyuan, Wang, Jing, Zou, Bohao, Li, Le, Yao, Linhui, Chen, Kechen, Ning, Lin, Wu, Bingyi, Zhao, Xiaoyang, Wang, Dong

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SVIM-asm: structural variant detection from haploid and diploid genome assemblies von Heller, David, Vingron, Martin

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ODGI: understanding pangenome graphs von Guarracino, Andrea, Heumos, Simon, Nahnsen, Sven, Prins, Pjotr, Garrison, Erik

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