ProteomeXchange provides globally coordinated proteomics data submission and dissemination von Vizcaíno, Juan A, Deutsch, Eric W, Wang, Rui, Csordas, Attila, Reisinger, Florian, Ríos, Daniel, Dianes, José A, Sun, Zhi, Farrah, Terry, Bandeira, Nuno, Binz, Pierre-Alain, Xenarios, Ioannis, Eisenacher, Martin, Mayer, Gerhard, Gatto, Laurent, Campos, Alex, Chalkley, Robert J, Kraus, Hans-Joachim, Albar, Juan Pablo, Martinez-Bartolomé, Salvador, Apweiler, Rolf, Omenn, Gilbert S, Martens, Lennart, Jones, Andrew R, Hermjakob, Henning

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PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3 von Ni, Weimin, Xu, Shou-Ling, González-Grandío, Eduardo, Chalkley, Robert J., Huhmer, Andreas F. R., Burlingame, Alma L., Wang, Zhi-Yong, Quail, Peter H.

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Modification Site Localization Scoring: Strategies and Performance von Chalkley, Robert J., Clauser, Karl R.

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Glucose Sensor O-GlcNAcylation Coordinates with Phosphorylation to Regulate Circadian Clock von Kaasik, Krista, Kivimäe, Saul, Allen, Jasmina J., Chalkley, Robert J., Huang, Yong, Baer, Kristin, Kissel, Holger, Burlingame, Alma L., Shokat, Kevan M., Ptáček, Louis J., Fu, Ying-Hui

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Peripheral Elevation of a Klotho Fragment Enhances Brain Function and Resilience in Young, Aging, and α-Synuclein Transgenic Mice von Leon, Julio, Moreno, Arturo J., Garay, Bayardo I., Chalkley, Robert J., Burlingame, Alma L., Wang, Dan, Dubal, Dena B.

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Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides von Chalkley, Robert J, Thalhammer, Agnes, Schoepfer, Ralf, Burlingame, A.L

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Revealing nascent proteomics in signaling pathways and cell differentiation von Forester, Craig M., Zhao, Qian, Phillips, Nancy J., Urisman, Anatoly, Chalkley, Robert J., Oses-Prieto, Juan A., Zhang, Li, Ruggero, Davide, Burlingame, Alma L.

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Use of a glycosylation site database to improve glycopeptide identification from complex mixtures von Chalkley, Robert J., Baker, Peter R.

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SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent growth in Arabidopsis von Bi, Yang, Shrestha, Ruben, Zhang, Zhenzhen, Hsu, Chuan-Chih, Reyes, Andres V, Karunadasa, Sumudu, Baker, Peter R, Maynard, Jason C, Liu, Yang, Hakimi, Amirmansoor, Lopez-Ferrer, Daniel, Hassan, Tahmid, Chalkley, Robert J, Xu, Shou-Ling, Wang, Zhi-Yong

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Multisite Light-Induced Phosphorylation of the Transcription Factor PIF3 Is Necessary for Both Its Rapid Degradation and Concomitant Negative Feedback Modulation of Photoreceptor p... von Ni, Weimin, Xu, Shou-Ling, Chalkley, Robert J., Pham, Thao Nguyen D., Guan, Shenheng, Maltby, Dave A., Burlingame, Alma L., Wang, Zhi-Yong, Quail, Peter H.

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Use of a mutant OGA for detecting O-GlcNAc modified proteins von Chalkley, Robert J

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The DegraBase: A Database of Proteolysis in Healthy and Apoptotic Human Cells von Crawford, Emily D., Seaman, Julia E., Agard, Nick, Hsu, Gerald W., Julien, Olivier, Mahrus, Sami, Nguyen, Huy, Shimbo, Kazutaka, Yoshihara, Hikari A.I., Zhuang, Min, Chalkley, Robert J., Wells, James A.

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Expanding the Use of Spectral Libraries in Proteomics von Deutsch, Eric W, Perez-Riverol, Yasset, Chalkley, Robert J, Wilhelm, Mathias, Tate, Stephen, Sachsenberg, Timo, Walzer, Mathias, Käll, Lukas, Delanghe, Bernard, Böcker, Sebastian, Schymanski, Emma L, Wilmes, Paul, Dorfer, Viktoria, Kuster, Bernhard, Volders, Pieter-Jan, Jehmlich, Nico, Vissers, Johannes P. C, Wolan, Dennis W, Wang, Ana Y, Mendoza, Luis, Shofstahl, Jim, Dowsey, Andrew W, Griss, Johannes, Salek, Reza M, Neumann, Steffen, Binz, Pierre-Alain, Lam, Henry, Vizcaíno, Juan Antonio, Bandeira, Nuno, Röst, Hannes

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The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics von Vizcaíno, Juan Antonio, Mayer, Gerhard, Perkins, Simon, Barsnes, Harald, Vaudel, Marc, Perez-Riverol, Yasset, Ternent, Tobias, Uszkoreit, Julian, Eisenacher, Martin, Fischer, Lutz, Rappsilber, Juri, Netz, Eugen, Walzer, Mathias, Kohlbacher, Oliver, Leitner, Alexander, Chalkley, Robert J., Ghali, Fawaz, Martínez-Bartolomé, Salvador, Deutsch, Eric W., Jones, Andrew R.

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Phosphorylation-driven epichaperome assembly is a regulator of cellular adaptability and proliferation von Roychowdhury, Tanaya, McNutt, Seth W., Pasala, Chiranjeevi, Nguyen, Hieu T., Thornton, Daniel T., Sharma, Sahil, Botticelli, Luke, Digwal, Chander S., Joshi, Suhasini, Yang, Nan, Panchal, Palak, Chakrabarty, Souparna, Bay, Sadik, Markov, Vladimir, Kwong, Charlene, Lisanti, Jeanine, Chung, Sun Young, Ginsberg, Stephen D., Yan, Pengrong, De Stanchina, Elisa, Corben, Adriana, Modi, Shanu, Alpaugh, Mary L., Colombo, Giorgio, Erdjument-Bromage, Hediye, Neubert, Thomas A., Chalkley, Robert J., Baker, Peter R., Burlingame, Alma L., Rodina, Anna, Chiosis, Gabriela, Chu, Feixia

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The effect of using an inappropriate protein database for proteomic data analysis von Knudsen, Giselle M, Chalkley, Robert J

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NGF and ProNGF: Regulation of neuronal and neoplastic responses through receptor signaling von Bradshaw, Ralph A., Pundavela, Jay, Biarc, Jordane, Chalkley, Robert J., Burlingame, A.L., Hondermarck, Hubert

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Proteomics Standards Initiative Extended FASTA Format von Binz, Pierre-Alain, Shofstahl, Jim, Vizcaíno, Juan Antonio, Barsnes, Harald, Chalkley, Robert J, Menschaert, Gerben, Alpi, Emanuele, Clauser, Karl, Eng, Jimmy K, Lane, Lydie, Seymour, Sean L, Sánchez, Luis Francisco Hernández, Mayer, Gerhard, Eisenacher, Martin, Perez-Riverol, Yasset, Kapp, Eugene A, Mendoza, Luis, Baker, Peter R, Collins, Andrew, Van Den Bossche, Tim, Deutsch, Eric W

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In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types von Chalkley, Robert J., Baker, Peter R., Medzihradszky, Katalin F., Lynn, Aenoch J., Burlingame, A.L.

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Proteomic analysis of platelet-rich and platelet-poor plasma von Miroshnychenko, Olga, Chalkley, Robert J., Leib, Ryan D., Everts, Peter A., Dragoo, Jason L.

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