SmedGD: the Schmidtea mediterranea genome database von Robb, Sofia M.C, Ross, Eric, Alvarado, Alejandro Sánchez

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes von Cantarel, Brandi L, Korf, Ian, Robb, Sofia M C, Parra, Genis, Ross, Eric, Moore, Barry, Holt, Carson, Sánchez Alvarado, Alejandro, Yandell, Mark

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SmedGD 2.0: The Schmidtea mediterranea genome database von Robb, Sofia M.C., Gotting, Kirsten, Ross, Eric, Sánchez Alvarado, Alejandro

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An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes von Timoshevskaya, Nataliya, Eşkut, Kaan İ., Timoshevskiy, Vladimir A., Robb, Sofia M.C., Holt, Carson, Hess, Jon E., Parker, Hugo J., Baker, Cindy F., Miller, Allison K., Saraceno, Cody, Yandell, Mark, Krumlauf, Robb, Narum, Shawn R., Lampman, Ralph T., Gemmell, Neil J., Mountcastle, Jacquelyn, Haase, Bettina, Balacco, Jennifer R., Formenti, Giulio, Pelan, Sarah, Sims, Ying, Howe, Kerstin, Fedrigo, Olivier, Jarvis, Erich D., Smith, Jeramiah J.

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The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution von Smith, Jeramiah J., Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C., Parker, Hugo J., Cook, Malcolm E., Hess, Jon E., Narum, Shawn R., Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A., Waterbury, Courtney K. M., Saraceno, Cody, Wiedemann, Leanne M., Robb, Sofia M. C., Baker, Carl, Eichler, Evan E., Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T.

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Tracking the genome-wide outcomes of a transposable element burst over decades of amplification von Lu, Lu, Chen, Jinfeng, Robb, Sofia M. C., Okumoto, Yutaka, Stajich, Jason E., Wessler, Susan R.

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Topological structures and syntenic conservation in sea anemone genomes von Zimmermann, Bob, Montenegro, Juan D., Robb, Sofia M. C., Fropf, Whitney J., Weilguny, Lukas, He, Shuonan, Chen, Shiyuan, Lovegrove-Walsh, Jessica, Hill, Eric M., Chen, Cheng-Yi, Ragkousi, Katerina, Praher, Daniela, Fredman, David, Schultz, Darrin, Moran, Yehu, Simakov, Oleg, Genikhovich, Grigory, Gibson, Matthew C., Technau, Ulrich

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Genomic diversity generated by a transposable element burst in a rice recombinant inbred population von Chen, Jinfeng, Lu, Lu, Robb, Sofia M. C., Collin, Matthew, Okumoto, Yutaka, Stajich, Jason E., Wessler, Susan R.

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Cellular, ultrastructural and molecular analyses of epidermal cell development in the planarian Schmidtea mediterranea von Cheng, Li-Chun, Tu, Kimberly C., Seidel, Chris W., Robb, Sofia M.C., Guo, Fengli, Sánchez Alvarado, Alejandro

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Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms von Nowotarski, Stephanie H., Davies, Erin L., Robb, Sofia M. C., Ross, Eric J., Matentzoglu, Nicolas, Doddihal, Viraj, Mir, Mol, McClain, Melainia, Sánchez Alvarado, Alejandro

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Embryonic origin of adult stem cells required for tissue homeostasis and regeneration von Davies, Erin L, Lei, Kai, Seidel, Christopher W, Kroesen, Amanda E, McKinney, Sean A, Guo, Longhua, Robb, Sofia Mc, Ross, Eric J, Gotting, Kirsten, Alvarado, Alejandro Sánchez

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Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies von Matentzoglu, Nicolas, Goutte-Gattat, Damien, Tan, Shawn Zheng Kai, Balhoff, James P, Carbon, Seth, Caron, Anita R, Duncan, William D, Flack, Joe E, Haendel, Melissa, Harris, Nomi L, Hogan, William R, Hoyt, Charles Tapley, Jackson, Rebecca C, Kim, HyeongSik, Kir, Huseyin, Larralde, Martin, McMurry, Julie A, Overton, James A, Peters, Bjoern, Pilgrim, Clare, Stefancsik, Ray, Robb, Sofia Mc, Toro, Sabrina, Vasilevsky, Nicole A, Walls, Ramona, Mungall, Christopher J, Osumi-Sutherland, David

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The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration von Sánchez Alvarado, Alejandro, Newmark, Phillip A, Robb, Sofia M, Juste, Réjeanne

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Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution von Smith, Jeramiah J., Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C., Parker, Hugo J., Cook, Malcolm E., Hess, Jon E., Narum, Shawn R., Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A., Waterbury, Courtney K. M., Saraceno, Cody, Wiedemann, Leanne M., Robb, Sofia M. C., Baker, Carl, Eichler, Evan E., Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T.

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Hands-On Classroom Activities for Exploring Regeneration and Stem Cell Biology with Planarians von Accorsi, Alice, Williams, Monique M., Ross, Eric J., Robb, Sofia M. C., Elliott, Sarah a., Tu, Kimberly C., Alvarado, Alejandro sánchez

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Identification of immunological reagents for use in the study of freshwater planarians by means of whole-mount immunofluorescence and confocal microscopy von Robb, Sofia M.C., Alvarado, Alejandro Sánchez

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Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species von Matentzoglu, Nicolas, Balhoff, James P., Bello, Susan M., Boerkoel, Cornelius F., Bradford, Yvonne M., Carmody, Leigh C., Cooper, Laurel D., Grove, Christian A., Harris, Nomi L., Köhler, Sebastian, Laporte, Marie-Angélique, Laulederkind, Stanley L.F., Lee, Raymond, Mazandu, Gaston K., McMurry, Julie A., Mungall, Chris, Osumi-Sutherland, David, Pilgrim, Clare, Rageth, Kayli, Robb, Sofia M.C., Robinson, Peter N., Segerdell, Erik, Thessen, Anne, Vasilevsky, Nicole, Zhang, Xingmin A., Haendel, Melissa A.

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