Tracking the genome-wide outcomes of a transposable element burst over decades of amplification von Lu, Lu, Chen, Jinfeng, Robb, Sofia M. C., Okumoto, Yutaka, Stajich, Jason E., Wessler, Susan R.

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Topological structures and syntenic conservation in sea anemone genomes von Zimmermann, Bob, Montenegro, Juan D., Robb, Sofia M. C., Fropf, Whitney J., Weilguny, Lukas, He, Shuonan, Chen, Shiyuan, Lovegrove-Walsh, Jessica, Hill, Eric M., Chen, Cheng-Yi, Ragkousi, Katerina, Praher, Daniela, Fredman, David, Schultz, Darrin, Moran, Yehu, Simakov, Oleg, Genikhovich, Grigory, Gibson, Matthew C., Technau, Ulrich

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes von Cantarel, Brandi L, Korf, Ian, Robb, Sofia M C, Parra, Genis, Ross, Eric, Moore, Barry, Holt, Carson, Sánchez Alvarado, Alejandro, Yandell, Mark

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SmedGD 2.0: The Schmidtea mediterranea genome database von Robb, Sofia M.C., Gotting, Kirsten, Ross, Eric, Sánchez Alvarado, Alejandro

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SmedGD: the Schmidtea mediterranea genome database von Robb, Sofia M.C, Ross, Eric, Alvarado, Alejandro Sánchez

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The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution von Smith, Jeramiah J., Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C., Parker, Hugo J., Cook, Malcolm E., Hess, Jon E., Narum, Shawn R., Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A., Waterbury, Courtney K. M., Saraceno, Cody, Wiedemann, Leanne M., Robb, Sofia M. C., Baker, Carl, Eichler, Evan E., Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T.

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Sugar assimilation underlying dietary evolution of Neotropical bats von Camacho, Jasmin, Bernal-Rivera, Andrea, Peña, Valentina, Morales-Sosa, Pedro, Robb, Sofia M. C., Russell, Jonathon, Yi, Kexi, Wang, Yongfu, Tsuchiya, Dai, Murillo-García, Oscar E., Rohner, Nicolas

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Genomic diversity generated by a transposable element burst in a rice recombinant inbred population von Chen, Jinfeng, Lu, Lu, Robb, Sofia M. C., Collin, Matthew, Okumoto, Yutaka, Stajich, Jason E., Wessler, Susan R.

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The Use of RelocaTE and Unassembled Short Reads to Produce High-Resolution Snapshots of Transposable Element Generated Diversity in Rice von Robb, Sofia M C, Lu, Lu, Valencia, Elizabeth, Burnette, James M, Okumoto, Yutaka, Wessler, Susan R, Stajich, Jason E

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Cellular, ultrastructural and molecular analyses of epidermal cell development in the planarian Schmidtea mediterranea von Cheng, Li-Chun, Tu, Kimberly C., Seidel, Chris W., Robb, Sofia M.C., Guo, Fengli, Sánchez Alvarado, Alejandro

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An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes von Timoshevskaya, Nataliya, Eşkut, Kaan İ., Timoshevskiy, Vladimir A., Robb, Sofia M.C., Holt, Carson, Hess, Jon E., Parker, Hugo J., Baker, Cindy F., Miller, Allison K., Saraceno, Cody, Yandell, Mark, Krumlauf, Robb, Narum, Shawn R., Lampman, Ralph T., Gemmell, Neil J., Mountcastle, Jacquelyn, Haase, Bettina, Balacco, Jennifer R., Formenti, Giulio, Pelan, Sarah, Sims, Ying, Howe, Kerstin, Fedrigo, Olivier, Jarvis, Erich D., Smith, Jeramiah J.

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Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms von Nowotarski, Stephanie H., Davies, Erin L., Robb, Sofia M. C., Ross, Eric J., Matentzoglu, Nicolas, Doddihal, Viraj, Mir, Mol, McClain, Melainia, Sánchez Alvarado, Alejandro

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Embryonic origin of adult stem cells required for tissue homeostasis and regeneration von Davies, Erin L, Lei, Kai, Seidel, Christopher W, Kroesen, Amanda E, McKinney, Sean A, Guo, Longhua, Robb, Sofia Mc, Ross, Eric J, Gotting, Kirsten, Alvarado, Alejandro Sánchez

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The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration von Sánchez Alvarado, Alejandro, Newmark, Phillip A, Robb, Sofia M, Juste, Réjeanne

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Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution von Smith, Jeramiah J., Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C., Parker, Hugo J., Cook, Malcolm E., Hess, Jon E., Narum, Shawn R., Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A., Waterbury, Courtney K. M., Saraceno, Cody, Wiedemann, Leanne M., Robb, Sofia M. C., Baker, Carl, Eichler, Evan E., Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T.

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Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution von Smith, Jeramiah J., Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C., Parker, Hugo J., Cook, Malcolm E., Hess, Jon E., Narum, Shawn R., Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A., Waterbury, Courtney K. M., Saraceno, Cody, Wiedemann, Leanne M., Robb, Sofia M. C., Baker, Carl, Eichler, Evan E., Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T.

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Hands-On Classroom Activities for Exploring Regeneration and Stem Cell Biology with Planarians von Accorsi, Alice, Williams, Monique M., Ross, Eric J., Robb, Sofia M. C., Elliott, Sarah a., Tu, Kimberly C., Alvarado, Alejandro sánchez

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Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies von Matentzoglu, Nicolas, Goutte-Gattat, Damien, Tan, Shawn Zheng Kai, Balhoff, James P, Carbon, Seth, Caron, Anita R, Duncan, William D, Flack, Joe E, Haendel, Melissa, Harris, Nomi L, Hogan, William R, Hoyt, Charles Tapley, Jackson, Rebecca C, Kim, HyeongSik, Kir, Huseyin, Larralde, Martin, McMurry, Julie A, Overton, James A, Peters, Bjoern, Pilgrim, Clare, Stefancsik, Ray, Robb, Sofia Mc, Toro, Sabrina, Vasilevsky, Nicole A, Walls, Ramona, Mungall, Christopher J, Osumi-Sutherland, David

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Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI) von Toro, Sabrina, Anagnostopoulos, Anna V, Bello, Susan M, Blumberg, Kai, Cameron, Rhiannon, Carmody, Leigh, Diehl, Alexander D, Dooley, Damion M, Duncan, William D, Fey, Petra, Gaudet, Pascale, Harris, Nomi L, Joachimiak, Marcin P, Kiani, Leila, Lubiana, Tiago, Munoz-Torres, Monica C, O'Neil, Shawn, Osumi-Sutherland, David, Puig-Barbe, Aleix, Reese, Justin T, Reiser, Leonore, Robb, Sofia Mc, Ruemping, Troy, Seager, James, Sid, Eric, Stefancsik, Ray, Weber, Magalie, Wood, Valerie, Haendel, Melissa A, Mungall, Christopher J

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Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies von Matentzoglu, Nicolas, Goutte-Gattat, Damien, Shawn Zheng Kai Tan, Balhoff, James P, Carbon, Seth, Caron, Anita R, Duncan, William D, Flack, Joe E, Haendel, Melissa, Harris, Nomi L, Hogan, William R, Charles Tapley Hoyt, Jackson, Rebecca C, Kim, HyeongSik, Kir, Huseyin, Larralde, Martin, McMurry, Julie A, Overton, James A, Peters, Bjoern, Pilgrim, Clare, Stefancsik, Ray, Sofia MC Robb, Toro, Sabrina, Vasilevsky, Nicole A, Walls, Ramona, Mungall, Christopher J, Osumi-Sutherland, David

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