Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain von Lake, Blue B., Ai, Rizi, Kaeser, Gwendolyn E., Salathia, Neeraj S., Yung, Yun C., Liu, Rui, Wildberg, Andre, Gao, Derek, Fung, Ho-Lim, Chen, Song, Vijayaraghavan, Raakhee, Wong, Julian, Chen, Allison, Sheng, Xiaoyan, Kaper, Fiona, Shen, Richard, Ronaghi, Mostafa, Fan, Jian-Bing, Wang, Wei, Chun, Jerold, Zhang, Kun

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Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes von Ai, Rizi, Laragione, Teresina, Hammaker, Deepa, Boyle, David L., Wildberg, Andre, Maeshima, Keisuke, Palescandolo, Emanuele, Krishna, Vinod, Pocalyko, David, Whitaker, John W., Bai, Yuchen, Nagpal, Sunil, Bachman, Kurtis E., Ainsworth, Richard I., Wang, Mengchi, Ding, Bo, Gulko, Percio S., Wang, Wei, Firestein, Gary S.

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Lasp1 regulates adherens junction dynamics and fibroblast transformation in destructive arthritis von Beckmann, Denise, Römer-Hillmann, Anja, Krause, Annika, Hansen, Uwe, Wehmeyer, Corinna, Intemann, Johanna, de Gorter, David J. J., Dankbar, Berno, Hillen, Jan, Heitzmann, Marianne, Begemann, Isabell, Galic, Milos, Weinhage, Toni, Foell, Dirk, Ai, Rizi, Kremerskothen, Joachim, Kiener, Hans P., Müller, Sylvia, Kamradt, Thomas, Schröder, Christopher, Leitão, Elsa, Horsthemke, Bernhard, Rosenstiel, Philip, Nordström, Karl, Gasparoni, Gilles, Gasparoni, Nina, Walter, Jörn, Li, Na, Yang, Xinyi, Chung, Ho-Ryun, Pavenstädt, Hermann, Lindemann, Nico, Schnittler, Hans J., Wang, Wei, Firestein, Gary S., Pap, Thomas, Korb-Pap, Adelheid

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Joint-specific DNA methylation and transcriptome signatures in rheumatoid arthritis identify distinct pathogenic processes von Ai, Rizi, Hammaker, Deepa, Boyle, David L., Morgan, Rachel, Walsh, Alice M., Fan, Shicai, Firestein, Gary S., Wang, Wei

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Epigenetic Regulation of Nutrient Transporters in Rheumatoid Arthritis Fibroblast‐like Synoviocytes von Torres, Alyssa, Pedersen, Brian, Cobo, Isidoro, Ai, Rizi, Coras, Roxana, Murillo‐Saich, Jessica, Nygaard, Gyrid, Sanchez‐Lopez, Elsa, Murphy, Anne, Wang, Wei, Firestein, Gary S., Guma, Monica

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Discovery of antimicrobial agent targeting tryptophan synthase von Bosken, Yuliana K., Ai, Rizi, Hilario, Eduardo, Ghosh, Rittik K., Dunn, Michael F., Kan, Shih‐Hsin, Niks, Dimitri, Zhou, Huanbin, Ma, Wenbo, Mueller, Leonard J., Fan, Li, Chang, Chia‐En A.

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Multifaceted immune dysregulation characterizes individuals at-risk for rheumatoid arthritis von James, Eddie A., Holers, V. Michael, Iyer, Radhika, Prideaux, E. Barton, Rao, Navin L., Rims, Cliff, Muir, Virginia S., Posso, Sylvia E., Bloom, Michelle S., Zia, Amin, Elliott, Serra E., Adamska, Julia Z., Ai, Rizi, Brewer, R. Camille, Seifert, Jennifer A., Moss, LauraKay, Barzideh, Saman, Demoruelle, M. Kristen, Striebich, Christopher C., Okamoto, Yuko, Sainbayar, Enkhtsogt, Crook, Alexandra A., Peterson, Ryan A., Vanderlinden, Lauren A., Wang, Wei, Boyle, David L., Robinson, William H., Buckner, Jane H., Firestein, Gary S., Deane, Kevin D.

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Distinct DNA Methylation Patterns of Rheumatoid Arthritis Peripheral Blood and Synovial Tissue T Cells von Ai, Rizi, Boyle, David L., Wang, Wei, Firestein, Gary S.

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Integrative analysis with expanded DNA methylation data reveals common key regulators and pathways in cancers von Fan, Shicai, Tang, Jianxiong, Li, Nan, Zhao, Ying, Ai, Rizi, Zhang, Kai, Wang, Mengchi, Du, Wei, Wang, Wei

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Joint Location–Specific JAK‐STAT Signaling in Rheumatoid Arthritis Fibroblast‐like Synoviocytes von Hammaker, Deepa, Nygaard, Gyrid, Kuhs, Amanda, Ai, Rizi, Boyle, David L., Wang, Wei, Firestein, Gary S.

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Assessing characteristics of RNA amplification methods for single cell RNA sequencing von Dueck, Hannah R, Ai, Rizi, Camarena, Adrian, Ding, Bo, Dominguez, Reymundo, Evgrafov, Oleg V, Fan, Jian-Bing, Fisher, Stephen A, Herstein, Jennifer S, Kim, Tae Kyung, Kim, Jae Mun Hugo, Lin, Ming-Yi, Liu, Rui, Mack, William J, McGroty, Sean, Nguyen, Joseph D, Salathia, Neeraj, Shallcross, Jamie, Souaiaia, Tade, Spaethling, Jennifer M, Walker, Christopher P, Wang, Jinhui, Wang, Kai, Wang, Wei, Wildberg, Andre, Zheng, Lina, Chow, Robert H, Eberwine, James, Knowles, James A, Zhang, Kun, Kim, Junhyong

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Bayesian Networks Predict Neuronal Transdifferentiation von Ainsworth, Richard I, Ai, Rizi, Ding, Bo, Li, Nan, Zhang, Kai, Wang, Wei

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Caspase‐8 Variant G Regulates Rheumatoid Arthritis Fibroblast‐Like Synoviocyte Aggressive Behavior von Ansalone, Cecilia, Ainsworth, Richard I., Nygaard, Gyrid, Ai, Rizi, Prideaux, Edward B., Hammaker, Deepa, Perumal, Narayanan B., Weichert, Ken, Tung, Frances, Kodandapani, Lalitha, Sauder, J. Michael, Mertsching, Elisabeth C., Benschop, Robert J., Boyle, David L., Wang, Wei, Firestein, Gary S.

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Synergistic Regulation and Ligand-Induced Conformational Changes of Tryptophan Synthase von Fatmi, M. Qaiser, Ai, Rizi, Chang, Chia-en A

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Abnormal PTPN11 enhancer methylation promotes rheumatoid arthritis fibroblast-like synoviocyte aggressiveness and joint inflammation von Maeshima, Keisuke, Stanford, Stephanie M, Hammaker, Deepa, Sacchetti, Cristiano, Zeng, Li-Fan, Ai, Rizi, Zhang, Vida, Boyle, David L, Aleman Muench, German R, Feng, Gen-Sheng, Whitaker, John W, Zhang, Zhong-Yin, Wang, Wei, Bottini, Nunzio, Firestein, Gary S

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Expanded encyclopaedias of DNA elements in the human and mouse genomes von Moore, Jill E., Purcaro, Michael J., Pratt, Henry E., Epstein, Charles B., Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A., Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L., Freese, Peter, Gorkin, David U., Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A., Mortazavi, Ali, Keller, Cheryl A., Zhang, Xiao-Ou, Elhajjajy, Shaimae I., Huey, Jack, Dickel, Diane E., Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B., Zhang, Jialing, Victorsen, Alec, White, Kevin P., Visel, Axel, Yeo, Gene W., Burge, Christopher B., Lécuyer, Eric, Gilbert, David M., Dekker, Job, Rinn, John, Mendenhall, Eric M., Ecker, Joseph R., Kellis, Manolis, Klein, Robert J., Noble, William S., Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J., Cherry, J. Michael, Myers, Richard M., Ren, Bing, Graveley, Brenton R., Gerstein, Mark B., Pennacchio, Len A., Snyder, Michael P., Bernstein, Bradley E., Wold, Barbara, Hardison, Ross C., Gingeras, Thomas R., Stamatoyannopoulos, John A., Weng, Zhiping

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Normalization and noise reduction for single cell RNA-seq experiments von Ding, Bo, Zheng, Lina, Zhu, Yun, Li, Nan, Jia, Haiyang, Ai, Rizi, Wildberg, Andre, Wang, Wei

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52828 Skin cancer risk is increased by somatic mutations detected noninvasively in healthy-appearing sun-exposed skin von Whitaker, John, Kaur, Kulvinder, Ai, Rizi, Perry, Allyson, Riley, Bae, Roberts, Emma, Ibarra, Claudia, Jansen, Burkhard, Clarke, Loren, Stone, Steven

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Predicting CpG methylation levels by integrating Infinium HumanMethylation450 BeadChip array data von Fan, Shicai, Huang, Kang, Ai, Rizi, Wang, Mengchi, Wang, Wei

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Perspectives on ENCODE von Snyder, Michael P., Gingeras, Thomas R., Moore, Jill E., Weng, Zhiping, Gerstein, Mark B., Ren, Bing, Hardison, Ross C., Stamatoyannopoulos, John A., Graveley, Brenton R., Feingold, Elise A., Pazin, Michael J., Pagan, Michael, Gilchrist, Daniel A., Hitz, Benjamin C., Cherry, J. Michael, Bernstein, Bradley E., Mendenhall, Eric M., Zerbino, Daniel R., Frankish, Adam, Flicek, Paul, Myers, Richard M.

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