Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin von Snyder, Matthew W., Kircher, Martin, Hill, Andrew J., Daza, Riza M., Shendure, Jay

Volltext

Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data von Pliner, Hannah A., Packer, Jonathan S., McFaline-Figueroa, José L., Cusanovich, Darren A., Daza, Riza M., Aghamirzaie, Delasa, Srivatsan, Sanjay, Qiu, Xiaojie, Jackson, Dana, Minkina, Anna, Adey, Andrew C., Steemers, Frank J., Shendure, Jay, Trapnell, Cole

Volltext

The cis-regulatory dynamics of embryonic development at single-cell resolution von Cusanovich, Darren A., Reddington, James P., Garfield, David A., Daza, Riza M., Aghamirzaie, Delasa, Marco-Ferreres, Raquel, Pliner, Hannah A., Christiansen, Lena, Qiu, Xiaojie, Steemers, Frank J., Trapnell, Cole, Shendure, Jay, Furlong, Eileen E. M.

Volltext

A human cell atlas of fetal gene expression von Cao, Junyue, O'Day, Diana R, Pliner, Hannah A, Kingsley, Paul D, Deng, Mei, Daza, Riza M, Zager, Michael A, Aldinger, Kimberly A, Blecher-Gonen, Ronnie, Zhang, Fan, Spielmann, Malte, Palis, James, Doherty, Dan, Steemers, Frank J, Glass, Ian A, Trapnell, Cole, Shendure, Jay

Volltext

Joint profiling of chromatin accessibility and gene expression in thousands of single cells von Cao, Junyue, Cusanovich, Darren A, Ramani, Vijay, Aghamirzaie, Delasa, Pliner, Hannah A, Hill, Andrew J, Daza, Riza M, McFaline-Figueroa, Jose L, Packer, Jonathan S, Christiansen, Lena, Steemers, Frank J, Adey, Andrew C, Trapnell, Cole, Shendure, Jay

Volltext

Massively multiplex chemical transcriptomics at single-cell resolution von Srivatsan, Sanjay R, McFaline-Figueroa, José L, Ramani, Vijay, Saunders, Lauren, Cao, Junyue, Packer, Jonathan, Pliner, Hannah A, Jackson, Dana L, Daza, Riza M, Christiansen, Lena, Zhang, Fan, Steemers, Frank, Shendure, Jay, Trapnell, Cole

Volltext

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility von Cusanovich, Darren A., Hill, Andrew J., Aghamirzaie, Delasa, Daza, Riza M., Pliner, Hannah A., Berletch, Joel B., Filippova, Galina N., Huang, Xingfan, Christiansen, Lena, DeWitt, William S., Lee, Choli, Regalado, Samuel G., Read, David F., Steemers, Frank J., Disteche, Christine M., Trapnell, Cole, Shendure, Jay

Volltext

Precise genomic deletions using paired prime editing von Choi, Junhong, Chen, Wei, Suiter, Chase C., Lee, Choli, Chardon, Florence M., Yang, Wei, Leith, Anh, Daza, Riza M., Martin, Beth, Shendure, Jay

Volltext

Pluripotent stem cell-derived model of the post-implantation human embryo von Weatherbee, Bailey A. T., Gantner, Carlos W., Iwamoto-Stohl, Lisa K., Daza, Riza M., Hamazaki, Nobuhiko, Shendure, Jay, Zernicka-Goetz, Magdalena

Volltext

A human cell atlas of fetal chromatin accessibility von Domcke, Silvia, Hill, Andrew J, Daza, Riza M, Cao, Junyue, O'Day, Diana R, Pliner, Hannah A, Aldinger, Kimberly A, Pokholok, Dmitry, Zhang, Fan, Milbank, Jennifer H, Zager, Michael A, Glass, Ian A, Steemers, Frank J, Doherty, Dan, Trapnell, Cole, Cusanovich, Darren A, Shendure, Jay

Volltext

Accurate classification of BRCA1 variants with saturation genome editing von Findlay, Gregory M., Daza, Riza M., Martin, Beth, Zhang, Melissa D., Leith, Anh P., Gasperini, Molly, Janizek, Joseph D., Huang, Xingfan, Starita, Lea M., Shendure, Jay

Volltext

Comprehensive single-cell transcriptional profiling of a multicellular organism von Cao, Junyue, Packer, Jonathan S., Ramani, Vijay, Cusanovich, Darren A., Huynh, Chau, Daza, Riza, Qiu, Xiaojie, Lee, Choli, Furlan, Scott N., Steemers, Frank J., Adey, Andrew, Waterston, Robert H., Trapnell, Cole, Shendure, Jay

Volltext

A time-resolved, multi-symbol molecular recorder via sequential genome editing von Choi, Junhong, Chen, Wei, Minkina, Anna, Chardon, Florence M., Suiter, Chase C., Regalado, Samuel G., Domcke, Silvia, Hamazaki, Nobuhiko, Lee, Choli, Martin, Beth, Daza, Riza M., Shendure, Jay

Volltext

Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing von Cusanovich, Darren A., Daza, Riza, Adey, Andrew, Pliner, Hannah A., Christiansen, Lena, Gunderson, Kevin L., Steemers, Frank J., Trapnell, Cole, Shendure, Jay

Volltext

Predicting cellular responses to complex perturbations in high‐throughput screens von Lotfollahi, Mohammad, Klimovskaia Susmelj, Anna, De Donno, Carlo, Hetzel, Leon, Ji, Yuge, Ibarra, Ignacio L, Srivatsan, Sanjay R, Naghipourfar, Mohsen, Daza, Riza M, Martin, Beth, Shendure, Jay, McFaline‐Figueroa, Jose L, Boyeau, Pierre, Wolf, F Alexander, Yakubova, Nafissa, Günnemann, Stephan, Trapnell, Cole, Lopez‐Paz, David, Theis, Fabian J

Volltext

Fragment Length of Circulating Tumor DNA von Underhill, Hunter R, Kitzman, Jacob O, Hellwig, Sabine, Welker, Noah C, Daza, Riza, Baker, Daniel N, Gligorich, Keith M, Rostomily, Robert C, Bronner, Mary P, Shendure, Jay

Volltext

Copy-Number Variation and False Positive Prenatal Aneuploidy Screening Results von Snyder, Matthew W, Simmons, LaVone E, Kitzman, Jacob O, Coe, Bradley P, Henson, Jessica M, Daza, Riza M, Eichler, Evan E, Shendure, Jay, Gammill, Hilary S

Volltext

The continuum of Drosophila embryonic development at single-cell resolution von Calderon, Diego, Blecher-Gonen, Ronnie, Huang, Xingfan, Secchia, Stefano, Kentro, James, Daza, Riza M, Martin, Beth, Dulja, Alessandro, Schaub, Christoph, Trapnell, Cole, Larschan, Erica, O'Connor-Giles, Kate M, Furlong, Eileen E M, Shendure, Jay

Volltext

High-quality draft assemblies of mammalian genomes from massively parallel sequence data von Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J, Burton, Joshua N, Walker, Bruce J, Sharpe, Ted, Hall, Giles, Shea, Terrance P, Sykes, Sean, Berlin, Aaron M, Aird, Daniel, Costello, Maura, Daza, Riza, Williams, Louise, Nicol, Robert, Gnirke, Andreas, Nusbaum, Chad, Lander, Eric S, Jaffe, David B

Volltext

Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures von Rai, Vivek, Quang, Daniel X., Erdos, Michael R., Cusanovich, Darren A., Daza, Riza M., Narisu, Narisu, Zou, Luli S., Didion, John P., Guan, Yuanfang, Shendure, Jay, Parker, Stephen C.J., Collins, Francis S.

Volltext