Editorial 2025 von Rieseberg, Loren, Sibbett, Benjamin, Freeland, Joanna, Rivera‐Colon, Angel

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Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics von Rochette, Nicolas C., Rivera‐Colón, Angel G., Catchen, Julian M.

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Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data von Rivera‐Colón, Angel G., Rochette, Nicolas C., Catchen, Julian M.

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On the causes, consequences, and avoidance of PCR duplicates: Towards a theory of library complexity von Rochette, Nicolas C., Rivera‐Colón, Angel G., Walsh, Jessica, Sanger, Thomas J., Campbell‐Staton, Shane C., Catchen, Julian M.

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Removing the bad apples: A simple bioinformatic method to improve loci‐recovery in de novo RADseq data for non‐model organisms von Cerca, José, Maurstad, Marius F., Rochette, Nicolas C., Rivera‐Colón, Angel G., Rayamajhi, Niraj, Catchen, Julian M., Struck, Torsten H., Freckleton, Robert

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Genomics and conservation: Guidance from training to analyses and applications von Schiebelhut, Lauren M., Guillaume, Annie S., Kuhn, Arianna, Schweizer, Rena M., Armstrong, Ellie E., Beaumont, Mark A., Byrne, Margaret, Cosart, Ted, Hand, Brian K., Howard, Leif, Mussmann, Steven M., Narum, Shawn R., Rasteiro, Rita, Rivera‐Colón, Angel G., Saarman, Norah, Sethuraman, Arun, Taylor, Helen R., Thomas, Gregg W. C., Wellenreuther, Maren, Luikart, Gordon

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Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish von Rivera-Colón, Angel G, Rayamajhi, Niraj, Minhas, Bushra Fazal, Madrigal, Giovanni, Bilyk, Kevin T, Yoon, Veronica, Hüne, Mathias, Gregory, Susan, Cheng, C H Christina, Catchen, Julian M

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Sequence Analysis and Ontogenetic Expression Patterns of Cone Opsin Genes in the Bluefin Killifish (Lucania goodei) von Chang, Chia-Hao, Catchen, Julian, Moran, Rachel L, Rivera-Colón, Angel G, Wang, Yu-Chun, Fuller, Rebecca C

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Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species von Cerca, José, Rivera-Colón, Angel G, Ferreira, Mafalda S, Ravinet, Mark, Nowak, Michael D, Catchen, Julian M, Struck, Torsten H

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Genomic analysis supports Cape Lion population connectivity prior to colonial eradication and extinction von de Flamingh, Alida, Gnoske, Thomas P, Rivera-Colón, Angel G, Simeonovski, Velizar A, Kerbis Peterhans, Julian C, Yamaguchi, Nobuyuki, Witt, Kelsey E, Catchen, Julian, Roca, Alfred L, Malhi, Ripan Singh

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Numt Parser: Automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera von de Flamingh, Alida, Rivera-Colón, Angel G, Gnoske, Tom P, Kerbis Peterhans, Julian C, Catchen, Julian, Malhi, Ripan S, Roca, Alfred L

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Multiple Loci Control Eyespot Number Variation on the Hindwings of Bicyclus anynana Butterflies von Rivera-Colón, Angel G, Westerman, Erica L, Van Belleghem, Steven M, Monteiro, Antónia, Papa, Riccardo

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The genomic basis of the plant island syndrome in Darwin’s giant daisies von Cerca, José, Petersen, Bent, Lazaro-Guevara, José Miguel, Rivera-Colón, Angel, Birkeland, Siri, Vizueta, Joel, Li, Siyu, Li, Qionghou, Loureiro, João, Kosawang, Chatchai, Díaz, Patricia Jaramillo, Rivas-Torres, Gonzalo, Fernández-Mazuecos, Mario, Vargas, Pablo, McCauley, Ross A., Petersen, Gitte, Santos-Bay, Luisa, Wales, Nathan, Catchen, Julian M., Machado, Daniel, Nowak, Michael D., Suh, Alexander, Sinha, Neelima R., Nielsen, Lene R., Seberg, Ole, Gilbert, M. Thomas P., Leebens-Mack, James H., Rieseberg, Loren H., Martin, Michael D.

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Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus -The Closest Ancestral Proxy of Antarctic Cryonotothenioids von Cheng, Chi-Hing Christina, Rivera-Colón, Angel G, Minhas, Bushra Fazal, Wilson, Loralee, Rayamajhi, Niraj, Vargas-Chacoff, Luis, Catchen, Julian M

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Ongoing introgression of a secondary sexual plumage trait in a stable avian hybrid zone von Long, Kira M, Rivera-Colón, Angel G, Bennett, Kevin F P, Catchen, Julian M, Braun, Michael J, Brawn, Jeffrey D

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Population Genomics Analysis with RAD, Reprised: Stacks 2 von Rivera-Colón, Angel G., Catchen, Julian

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The genome of the cryopelagic Antarctic bald notothen, Trematomus borchgrevinki von Rayamajhi, Niraj, Rivera-Colón, Angel G, Minhas, Bushra Fazal, Cheng, C-H Christina, Catchen, Julian M

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Removing the bad apples: A simple bioinformatic method to improve loci-recovery in de novo RADseq data for non-model organisms von Cerca, José, Maurstad, Marius Filomeno, Rochette, Nicolas C., Rivera-Colón, Angel G., Rayamajhi, Niraj, Catchen, Julian M., Struck, Torsten H

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Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie IEleginops maclovinus/I—The Closest Ancestral Proxy of Antarctic Cryonotothenioids von Cheng, Chi-Hing Christina, Rivera-Colón, Angel G, Minhas, Bushra Fazal, Wilson, Loralee, Rayamajhi, Niraj, Vargas-Chacoff, Luis, Catchen, Julian M

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Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species von Cerca, José, Colon, Angel G. Rivera, Ferreira, Mafalda S., Ravinet, Mark, Nowak, Michael, Catchen, Julian M., Struck, Torsten H

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