Ultra-fast FFT protein docking on graphics processors von Ritchie, David W., Venkatraman, Vishwesh

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PDB-wide identification of biological assemblies from conserved quaternary structure geometry von Dey, Sucharita, Ritchie, David W, Levy, Emmanuel D

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GrAPFI: predicting enzymatic function of proteins from domain similarity graphs von Sarker, Bishnu, Ritchie, David W, Aridhi, Sabeur

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Accelerating and focusing protein–protein docking correlations using multi-dimensional rotational FFT generating functions von Ritchie, David W., Kozakov, Dima, Vajda, Sandor

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Flexible protein docking refinement using pose-dependent normal mode analysis von Venkatraman, Vishwesh, Ritchie, David W.

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PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions von Alborzi, Seyed Ziaeddin, Ahmed Nacer, Amina, Najjar, Hiba, Ritchie, David W, Devignes, Marie-Dominique

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Protein–protein docking by fast generalized Fourier transforms on 5D rotational manifolds von Padhorny, Dzmitry, Kazennov, Andrey, Zerbe, Brandon S., Porter, Kathryn A., Xia, Bing, Mottarella, Scott E., Kholodov, Yaroslav, Ritchie, David W., Vajda, Sandor, Kozakov, Dima

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Computational discovery of direct associations between GO terms and protein domains von Alborzi, Seyed Ziaeddin, Ritchie, David W, Devignes, Marie-Dominique

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KBDOCK 2013: a spatial classification of 3D protein domain family interactions von Ghoorah, Anisah W, Devignes, Marie-Dominique, Smaïl-Tabbone, Malika, Ritchie, David W

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HexServer: an FFT-based protein docking server powered by graphics processors von Macindoe, Gary, Mavridis, Lazaros, Venkatraman, Vishwesh, Devignes, Marie-Dominique, Ritchie, David W

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Spatial clustering of protein binding sites for template based protein docking von Ghoorah, Anisah W., Devignes, Marie-Dominique, Smaïl-Tabbone, Malika, Ritchie, David W.

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Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP‐11 structural models von El Houasli, Marwa, Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah W., Grudinin, Sergei, Ritchie, David W.

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Calculating and scoring high quality multiple flexible protein structure alignments von Ritchie, David W

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Characterization of a relaxase belonging to the MOBT family, a widespread family in Firmicutes mediating the transfer of ICEs von Soler, Nicolas, Robert, Emilie, Chauvot de Beauchêne, Isaure, Monteiro, Philippe, Libante, Virginie, Maigret, Bernard, Staub, Johan, Ritchie, David W, Guédon, Gérard, Payot, Sophie, Devignes, Marie-Dominique, Leblond-Bourget, Nathalie

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Docking essential dynamics eigenstructures von Mustard, Diana, Ritchie, David W.

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Comparison of Ligand-Based and Receptor-Based Virtual Screening of HIV Entry Inhibitors for the CXCR4 and CCR5 Receptors Using 3D Ligand Shape Matching and Ligand−Receptor Docking... von Pérez-Nueno, Violeta I, Ritchie, David W, Rabal, Obdulia, Pascual, Rosalia, Borrell, Jose I, Teixidó, Jordi

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PEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation von Neveu, Emilie, Ritchie, David W, Popov, Petr, Grudinin, Sergei

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Using restraints in EROS‐DOCK improves model quality in pairwise and multicomponent protein docking von Ruiz Echartea, Maria Elisa, Ritchie, David W., Chauvot de Beauchêne, Isaure

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Protein docking using case-based reasoning von Ghoorah, Anisah W., Devignes, Marie-Dominique, Smaïl-Tabbone, Malika, Ritchie, David W.

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ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains von Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Ritchie, David W

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