TLS/FUS (translocated in liposarcoma/fused in sarcoma) regulates target gene transcription via single-stranded DNA response elements von Tan, Adelene Y, Riley, Todd R, Coady, Tristan, Bussemaker, Harmen J, Manley, James L

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Probing DNA shape and methylation state on a genomic scale with DNase I von Lazarovici, Allan, Zhou, Tianyin, Shafer, Anthony, Machado, Ana Carolina Dantas, Riley, Todd R., Sandstrom, Richard, Sabo, Peter J., Lu, Yan, Rohs, Remo, Stamatoyannopoulos, John A., Bussemaker, Harmen J.

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SELEX-seq: A Method for Characterizing the Complete Repertoire of Binding Site Preferences for Transcription Factor Complexes von Riley, Todd R., Slattery, Matthew, Abe, Namiko, Rastogi, Chaitanya, Liu, Dahong, Mann, Richard S., Bussemaker, Harmen J.

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Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE von Riley, Todd R, Lazarovici, Allan, Mann, Richard S, Bussemaker, Harmen J

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Evaluation of methods for modeling transcription factor sequence specificity von Weirauch, Matthew T, Cote, Atina, Norel, Raquel, Annala, Matti, Zhao, Yue, Riley, Todd R, Saez-Rodriguez, Julio, Cokelaer, Thomas, Vedenko, Anastasia, Talukder, Shaheynoor, Bussemaker, Harmen J, Morris, Quaid D, Bulyk, Martha L, Stolovitzky, Gustavo, Hughes, Timothy R

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Therapeutically targeting tumor microenvironment-mediated drug resistance in estrogen receptor-positive breast cancer von Shee, Kevin, Yang, Wei, Hinds, John W, Hampsch, Riley A, Varn, Frederick S, Traphagen, Nicole A, Patel, Kishan, Cheng, Chao, Jenkins, Nicole P, Kettenbach, Arminja N, Demidenko, Eugene, Owens, Philip, Faber, Anthony C, Golub, Todd R, Straussman, Ravid, Miller, Todd W

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Umbilical cord blood–derived T regulatory cells to prevent GVHD: kinetics, toxicity profile, and clinical effect von Brunstein, Claudio G., Miller, Jeffrey S., McKenna, David H., Hippen, Keli L., DeFor, Todd E., Sumstad, Darin, Curtsinger, Julie, Verneris, Michael R., MacMillan, Margaret L., Levine, Bruce L., Riley, James L., June, Carl H., Le, Chap, Weisdorf, Daniel J., McGlave, Philip B., Blazar, Bruce R., Wagner, John E.

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Drp1 Promotes KRas-Driven Metabolic Changes to Drive Pancreatic Tumor Growth von Nagdas, Sarbajeet, Kashatus, Jennifer A., Nascimento, Aldo, Hussain, Syed S., Trainor, Riley E., Pollock, Sarah R., Adair, Sara J., Michaels, Alex D., Sesaki, Hiromi, Stelow, Edward B., Bauer, Todd W., Kashatus, David F.

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Retinoic acid and rapamycin differentially affect and synergistically promote the ex vivo expansion of natural human T regulatory cells von Golovina, Tatiana N, Mikheeva, Tatiana, Brusko, Todd M, Blazar, Bruce R, Bluestone, Jeffrey A, Riley, James L

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Species invasions shift microbial phenology in a two-decade freshwater time series von Rohwer, Robin R, Hale, Riley J, Vander Zanden, M Jake, Miller, Todd R, McMahon, Katherine D

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Dysphagia after anterior cervical decompression and fusion : Prevalence and risk factors from a longitudinal cohort study von RILEY, Lee H, SKOLASKY, Richard L, ALBERT, Todd J, VACCARO, Alexander R, HELLER, John G

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Nurse-Enhanced Computerized Cognitive Training Increases Serum Brain-Derived Neurotropic Factor Levels and Improves Working Memory in Heart Failure von Pressler, Susan J., PhD, RN, Titler, Marita, PhD, RN, Koelling, Todd M., MD, Riley, Penny L., PhD, RN, Jung, Miyeon, MSN, RN, Hoyland-Domenico, Lisa, PhD, RN, Ronis, David L., PhD, Smith, Dean G., PhD, Bleske, Barry E., PharmD, Dorsey, Susan G., PhD, RN, Giordani, Bruno, PhD

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Dual CD4-based CAR T cells with distinct costimulatory domains mitigate HIV pathogenesis in vivo von Maldini, Colby R., Claiborne, Daniel T., Okawa, Ken, Chen, Tao, Dopkin, Derrick L., Shan, Xiaochuan, Power, Karen A., Trifonova, Radiana T., Krupp, Katharine, Phelps, Meredith, Vrbanac, Vladimir D., Tanno, Serah, Bateson, Timothy, Leslie, George J., Hoxie, James A., Boutwell, Christian L., Riley, James L., Allen, Todd M.

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Observations with the Differential Speckle Survey Instrument. XI. First Year of Observations from Apache Point Observatory von Davidson, James W., Horch, Elliott P., Majewski, Steven R., Fagan, Evan, Shea, Melissa A., Sutherland, Torrie, Wilson, Robert F., Lesley, D. Xavier, Pellegrino, Richard A., Leonard, Jonathan P., Wilson, John C., Chanover, Nancy J., Dow, Peter, Henry, Todd J., Ketzeback, William, McDonald, Devin, McMillan, Russet, Dembicky, Jack, DeColibus, Riley A., Gray, Candace, Townsend, Amanda

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Effects of Urbanization and Habitat Fragmentation on Bobcats and Coyotes in Southern California von Riley, Seth P. D., Sauvajot, Raymond M., Fuller, Todd K., York, Eric C., Kamradt, Denise A., Bromley, Cassity, Wayne, Robert K.

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Comparative genomics of biotechnologically important yeasts von Riley, Robert, Haridas, Sajeet, Wolfe, Kenneth H., Lopes, Mariana R., Hittinger, Chris Todd, Göker, Markus, Salamov, Asaf A., Wisecaver, Jennifer H., Long, Tanya M., Calvey, Christopher H., Aerts, Andrea L., Barry, Kerrie W., Choi, Cindy, Clum, Alicia, Coughlan, Aisling Y., Deshpande, Shweta, Douglass, Alexander P., Hanson, Sara J., Klenk, Hans-Peter, LaButti, Kurt M., Lapidus, Alla, Lindquist, Erika A., Lipzen, Anna M., Meier-Kolthoff, Jan P., Ohm, Robin A., Otillar, Robert P., Pangilinan, Jasmyn L., Peng, Yi, Rokas, Antonis, Rosa, Carlos A., Scheuner, Carmen, Sibirny, Andriy A., Slot, Jason C., Stielow, J. Benjamin, Sun, Hui, Kurtzman, Cletus P., Blackwell, Meredith, Grigoriev, Igor V., Jeffries, Thomas W.

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Performance of the Emergency Surgery Score in Nonelective Lower-Extremity Endovascular Procedures von Balasundaram, Naveen, Ramji, Sadhvika, Burgon, Riley D., Assefa, Mahilet, Chandra, Isaiah, Vogel, Todd R.

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Changes in Peripheral and Local Tumor Immunity after Neoadjuvant Chemotherapy Reshape Clinical Outcomes in Patients with Breast Cancer von Axelrod, Margaret L., Nixon, Mellissa J., Gonzalez-Ericsson, Paula I., Bergman, Riley E., Pilkinton, Mark A., McDonnell, Wyatt J., Sanchez, Violeta, Opalenik, Susan R., Loi, Sherene, Zhou, Jing, Mackay, Sean, Rexer, Brent N., Abramson, Vandana G., Jansen, Valerie M., Mallal, Simon, Donaldson, Joshua, Tolaney, Sara M., Krop, Ian E., Garrido-Castro, Ana C., Marotti, Jonathan D., Shee, Kevin, Miller, Todd W., Sanders, Melinda E., Mayer, Ingrid A., Salgado, Roberto, Balko, Justin M.

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Vocal Timbre and the Classification of Respondent Sex in US Phone-Based Surveys von Riley, Noah C, Blosnich, John R, Bear, Todd M, Reisner, Sari L

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Integrating mRNA and miRNA Weighted Gene Co-Expression Networks with eQTLs in the Nucleus Accumbens of Subjects with Alcohol Dependence von Mamdani, Mohammed, Williamson, Vernell, McMichael, Gowon O, Blevins, Tana, Aliev, Fazil, Adkins, Amy, Hack, Laura, Bigdeli, Tim, van der Vaart, Andrew D, Web, Bradley Todd, Bacanu, Silviu-Alin, Kalsi, Gursharan, Kendler, Kenneth S, Miles, Michael F, Dick, Danielle, Riley, Brien P, Dumur, Catherine, Vladimirov, Vladimir I

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