Combination Approach for Detecting Different Types of Alterations in Circulating Tumor DNA in Leiomyosarcoma von Przybyl, Joanna, Chabon, Jacob J, Spans, Lien, Ganjoo, Kristen N, Vennam, Sujay, Newman, Aaron M, Forgó, Erna, Varma, Sushama, Zhu, Shirley, Debiec-Rychter, Maria, Alizadeh, Ash A, Diehn, Maximilian, van de Rijn, Matt

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CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer von Dalerba, Piero, Sahoo, Debashis, Paik, Soonmyung, Guo, Xiangqian, Yothers, Greg, Song, Nan, Wilcox-Fogel, Nate, Forgó, Erna, Rajendran, Pradeep S, Miranda, Stephen P, Hisamori, Shigeo, Hutchison, Jacqueline, Kalisky, Tomer, Qian, Dalong, Wolmark, Norman, Fisher, George A, van de Rijn, Matt, Clarke, Michael F

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Structure-Guided Blockade of CSF1R Kinase in Tenosynovial Giant-Cell Tumor von Tap, William D, Wainberg, Zev A, Anthony, Stephen P, Ibrahim, Prabha N, Zhang, Chao, Healey, John H, Chmielowski, Bartosz, Staddon, Arthur P, Cohn, Allen Lee, Shapiro, Geoffrey I, Keedy, Vicki L, Singh, Arun S, Puzanov, Igor, Kwak, Eunice L, Wagner, Andrew J, Von Hoff, Daniel D, Weiss, Glen J, Ramanathan, Ramesh K, Zhang, Jiazhong, Habets, Gaston, Zhang, Ying, Burton, Elizabeth A, Visor, Gary, Sanftner, Laura, Severson, Paul, Nguyen, Hoa, Kim, Marie J, Marimuthu, Adhirai, Tsang, Garson, Shellooe, Rafe, Gee, Carolyn, West, Brian L, Hirth, Peter, Nolop, Keith, van de Rijn, Matt, Hsu, Henry H, Peterfy, Charles, Lin, Paul S, Tong-Starksen, Sandra, Bollag, Gideon

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GFPT2 -Expressing Cancer-Associated Fibroblasts Mediate Metabolic Reprogramming in Human Lung Adenocarcinoma von Zhang, Weiruo, Bouchard, Gina, Yu, Alice, Shafiq, Majid, Jamali, Mehran, Shrager, Joseph B, Ayers, Kelsey, Bakr, Shaimaa, Gentles, Andrew J, Diehn, Maximilian, Quon, Andrew, West, Robert B, Nair, Viswam, van de Rijn, Matt, Napel, Sandy, Plevritis, Sylvia K

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Vangl2/RhoA Signaling Pathway Regulates Stem Cell Self-Renewal Programs and Growth in Rhabdomyosarcoma von Hayes, Madeline N., McCarthy, Karin, Jin, Alexander, Oliveira, Mariana L., Iyer, Sowmya, Garcia, Sara P., Sindiri, Sivasish, Gryder, Berkley, Motala, Zainab, Nielsen, G. Petur, Borg, Jean-Paul, van de Rijn, Matt, Malkin, David, Khan, Javed, Ignatius, Myron S., Langenau, David M.

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Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds von Chang, Howard Y, Sneddon, Julie B, Alizadeh, Ash A, Sood, Ruchira, West, Rob B, Montgomery, Kelli, Chi, Jen-Tsan, van de Rijn, Matt, Botstein, David, Brown, Patrick O

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Ano1 is a selective marker of interstitial cells of Cajal in the human and mouse gastrointestinal tract von Gomez-Pinilla, Pedro J, Gibbons, Simon J, Bardsley, Michael R, Lorincz, Andrea, Pozo, Maria J, Pasricha, Pankaj J, Van de Rijn, Matt, West, Robert B, Sarr, Michael G, Kendrick, Michael L, Cima, Robert R, Dozois, Eric J, Larson, David W, Ordog, Tamas, Farrugia, Gianrico

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The Macrophage Colony-Stimulating Factor 1 Response Signature in Breast Carcinoma von BECK, Andrevv H, ESPINOSA, Inigo, EDRIS, Badreddin, RUI LI, MONTGOMERY, Kelli, SHIRLEY ZHU, VARMA, Sushama, MARINELLI, Robert J, VAN DE RIJN, Matt, WEST, Robert B

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A multiplexed in vivo approach to identify driver genes in small cell lung cancer von Lee, Myung Chang, Cai, Hongchen, Murray, Christopher W., Li, Chuan, Shue, Yan Ting, Andrejka, Laura, He, Andy L., Holzem, Alessandra M.E., Drainas, Alexandros P., Ko, Julie H., Coles, Garry L., Kong, Christina, Zhu, Shirley, Zhu, ChunFang, Wang, Jason, van de Rijn, Matt, Petrov, Dmitri A., Winslow, Monte M., Sage, Julien

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KIT Signaling Promotes Growth of Colon Xenograft Tumors in Mice and Is Up-Regulated in a Subset of Human Colon Cancers von Chen, Evan C, Karl, Taylor A, Kalisky, Tomer, Gupta, Santosh K, O’Brien, Catherine A, Longacre, Teri A, van de Rijn, Matt, Quake, Stephen R, Clarke, Michael F, Rothenberg, Michael E

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Translocation and expression of CSF1 in pigmented villonodular synovitis, tenosynovial giant cell tumor, rheumatoid arthritis and other reactive synovitides von CUPP, John S, MILLER, Melinda A, MONTGOMERY, Kelli D, NIELSEN, Torsten O, OCONNELL, John X, HUNTSMAN, David, VAN DE RIJN, Matt, GILKS, Cyril B, WEST, Robert B

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Modeling Clear Cell Sarcomagenesis in the Mouse: Cell of Origin Differentiation State Impacts Tumor Characteristics von Straessler, Krystal M., Jones, Kevin B., Hu, Hao, Jin, Huifeng, van de Rijn, Matt, Capecchi, Mario R.

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Atlas of clinically distinct cell states and ecosystems across human solid tumors von Luca, Bogdan A., Steen, Chloé B., Matusiak, Magdalena, Azizi, Armon, Varma, Sushama, Zhu, Chunfang, Przybyl, Joanna, Espín-Pérez, Almudena, Diehn, Maximilian, Alizadeh, Ash A., van de Rijn, Matt, Gentles, Andrew J., Newman, Aaron M.

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The immunoregulatory landscape of human tuberculosis granulomas von McCaffrey, Erin F., Donato, Michele, Keren, Leeat, Chen, Zhenghao, Delmastro, Alea, Fitzpatrick, Megan B., Gupta, Sanjana, Greenwald, Noah F., Baranski, Alex, Graf, William, Kumar, Rashmi, Bosse, Marc, Fullaway, Christine Camacho, Ramdial, Pratista K., Forgó, Erna, Jojic, Vladimir, Van Valen, David, Mehra, Smriti, Khader, Shabaana A., Bendall, Sean C., van de Rijn, Matt, Kalman, Daniel, Kaushal, Deepak, Hunter, Robert L., Banaei, Niaz, Steyn, Adrie J. C., Khatri, Purvesh, Angelo, Michael

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Prognostic relevance of the hexosamine biosynthesis pathway activation in leiomyosarcoma von Tolwani, Angela, Matusiak, Magdalena, Bui, Nam, Forgó, Erna, Varma, Sushama, Baratto, Lucia, Iagaru, Andrei, Lazar, Alexander J., van de Rijn, Matt, Przybyl, Joanna

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CD47-blocking immunotherapies stimulate macrophage-mediated destruction of small-cell lung cancer von Weiskopf, Kipp, Jahchan, Nadine S, Schnorr, Peter J, Cristea, Sandra, Ring, Aaron M, Maute, Roy L, Volkmer, Anne K, Volkmer, Jens-Peter, Liu, Jie, Lim, Jing Shan, Yang, Dian, Seitz, Garrett, Nguyen, Thuyen, Wu, Di, Jude, Kevin, Guerston, Heather, Barkal, Amira, Trapani, Francesca, George, Julie, Poirier, John T, Gardner, Eric E, Miles, Linde A, de Stanchina, Elisa, Lofgren, Shane M, Vogel, Hannes, Winslow, Monte M, Dive, Caroline, Thomas, Roman K, Rudin, Charles M, van de Rijn, Matt, Majeti, Ravindra, Garcia, K Christopher, Weissman, Irving L, Sage, Julien

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CD47-signal regulatory protein alpha (SIRPa) interaction is a therapeutic target for human solid tumors von Willingham, Stephen B, Volkmer, Jens-Peter, Gentles, Andrew J, Sahoo, Debashis, Dalerba, Piero, Mitra, Siddhartha S, Wang, Jian, Contreras-Trujillo, Humberto, Martin, Robin, Cohen, Justin D, Lovelace, Patricia, Scheeren, Ferenc A, Chao, Mark P, Weiskopf, Kipp, Tang, Chad, Volkmer, Anne Kathrin, Naik, Tejaswitha J, Storm, Theresa A, Mosley, Adriane R, Edris, Badreddin, Schmid, Seraina M, Sun, Chris K, Chua, Mei-Sze, Murillo, Oihana, Rajendran, Pradeep, Cha, Adriel C, Chin, Robert K, Kim, Dongkyoon, Adorno, Maddalena, Raveh, Tal, Tseng, Diane, Jaiswal, Siddhartha, Enger, Per Øyvind, Steinberg, Gary K, Li, Gordon, So, Samuel K, Majeti, Ravindra, Harsh, Griffith R, van de Rijn, Matt, Teng, Nelson N. H, Sunwoo, John B, Alizadeh, Ash A, Clarke, Michael F, Weissman, Irving L

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Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers von Chi, Jen-Tsan, Rodriguez, Edwin H, Wang, Zhen, Nuyten, Dimitry S A, Mukherjee, Sayan, van de Rijn, Matt, van de Vijver, Marc J, Hastie, Trevor, Brown, Patrick O

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Loss of H3K27 tri-methylation is a diagnostic marker for malignant peripheral nerve sheath tumors and an indicator for an inferior survival von Cleven, Arjen H G, Sannaa, Ghadah A Al, Briaire-de Bruijn, Inge, Ingram, Davis R, van de Rijn, Matt, Rubin, Brian P, de Vries, Maurits W, Watson, Kelsey L, Torres, Kelia E, Wang, Wei-Lien, van Duinen, Sjoerd G, Hogendoorn, Pancras C W, Lazar, Alexander J, Bovée, Judith V M G

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Human melanoma-initiating cells express neural crest nerve growth factor receptor CD271 von Boiko, Alexander D, Weissman, Irving L, Razorenova, Olga V, van de Rijn, Matt, Swetter, Susan M, Johnson, Denise L, Ly, Daphne P, Butler, Paris D, Yang, George P, Joshua, Benzion, Kaplan, Michael J, Longaker, Michael T

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