Advancements in Next-Generation Sequencing von Levy, Shawn E, Myers, Richard M

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Distinct Properties of Cell-Type-Specific and Shared Transcription Factor Binding Sites von Gertz, Jason, Savic, Daniel, Varley, Katherine E., Partridge, E. Christopher, Safi, Alexias, Jain, Preti, Cooper, Gregory M., Reddy, Timothy E., Crawford, Gregory E., Myers, Richard M.

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Genomic Patterns of Homozygosity in Worldwide Human Populations von Pemberton, Trevor J., Absher, Devin, Feldman, Marcus W., Myers, Richard M., Rosenberg, Noah A., Li, Jun Z.

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A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks von Jones, Felicity C., Chan, Yingguang Frank, Schmutz, Jeremy, Grimwood, Jane, Brady, Shannon D., Southwick, Audrey M., Absher, Devin M., Myers, Richard M., Reimchen, Thomas E., Deagle, Bruce E., Schluter, Dolph, Kingsley, David M.

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Genome-Wide Mapping of in Vivo Protein-DNA Interactions von Johnson, David S, Mortazavi, Ali, Myers, Richard M, Wold, Barbara

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A Neurodegeneration-Specific Gene-Expression Signature of Acutely Isolated Microglia from an Amyotrophic Lateral Sclerosis Mouse Model von Chiu, Isaac M., Morimoto, Emiko T.A., Goodarzi, Hani, Liao, Jennifer T., O’Keeffe, Sean, Phatnani, Hemali P., Muratet, Michael, Carroll, Michael C., Levy, Shawn, Tavazoie, Saeed, Myers, Richard M., Maniatis, Tom

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A Validated Regulatory Network for Th17 Cell Specification von Ciofani, Maria, Madar, Aviv, Galan, Carolina, Sellars, MacLean, Mace, Kieran, Pauli, Florencia, Agarwal, Ashish, Huang, Wendy, Parkurst, Christopher N., Muratet, Michael, Newberry, Kim M., Meadows, Sarah, Greenfield, Alex, Yang, Yi, Jain, Preti, Kirigin, Francis K., Birchmeier, Carmen, Wagner, Erwin F., Murphy, Kenneth M., Myers, Richard M., Bonneau, Richard, Littman, Dan R.

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S-matrix path integral approach to symmetries and soft theorems von Kim, Seolhwa, Kraus, Per, Monten, Ruben, Myers, Richard M.

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From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing von Marinov, Georgi K, Williams, Brian A, McCue, Ken, Schroth, Gary P, Gertz, Jason, Myers, Richard M, Wold, Barbara J

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Dynamic DNA methylation across diverse human cell lines and tissues von Varley, Katherine E, Gertz, Jason, Bowling, Kevin M, Parker, Stephanie L, Reddy, Timothy E, Pauli-Behn, Florencia, Cross, Marie K, Williams, Brian A, Stamatoyannopoulos, John A, Crawford, Gregory E, Absher, Devin M, Wold, Barbara J, Myers, Richard M

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Systematics of boundary actions in gauge theory and gravity von Kim, Seolhwa, Kraus, Per, Myers, Richard M.

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Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation von Gertz, Jason, Varley, Katherine E, Reddy, Timothy E, Bowling, Kevin M, Pauli, Florencia, Parker, Stephanie L, Kucera, Katerina S, Willard, Huntington F, Myers, Richard M

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Widespread plasticity in CTCF occupancy linked to DNA methylation von Wang, Hao, Maurano, Matthew T, Qu, Hongzhu, Varley, Katherine E, Gertz, Jason, Pauli, Florencia, Lee, Kristen, Canfield, Theresa, Weaver, Molly, Sandstrom, Richard, Thurman, Robert E, Kaul, Rajinder, Myers, Richard M, Stamatoyannopoulos, John A

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An integrated software system for analyzing ChIP-chip and ChIP-seq data von Wong, Wing H, Ji, Hongkai, Jiang, Hui, Ma, Wenxiu, Johnson, David S, Myers, Richard M

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Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution von Peichel, Catherine L, McCann, Shaugnessy R, Ross, Joseph A, Naftaly, Alice F S, Urton, James R, Cech, Jennifer N, Grimwood, Jane, Schmutz, Jeremy, Myers, Richard M, Kingsley, David M, White, Michael A

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Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors von Wang, Jie, Zhuang, Jiali, Iyer, Sowmya, Lin, XinYing, Whitfield, Troy W, Greven, Melissa C, Pierce, Brian G, Dong, Xianjun, Kundaje, Anshul, Cheng, Yong, Rando, Oliver J, Birney, Ewan, Myers, Richard M, Noble, William S, Snyder, Michael, Weng, Zhiping

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Evolving New Skeletal Traits by cis-Regulatory Changes in Bone Morphogenetic Proteins von Indjeian, Vahan B., Kingman, Garrett A., Jones, Felicity C., Guenther, Catherine A., Grimwood, Jane, Schmutz, Jeremy, Myers, Richard M., Kingsley, David M.

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Occupancy maps of 208 chromatin-associated proteins in one human cell type von Partridge, E. Christopher, Chhetri, Surya B., Prokop, Jeremy W., Ramaker, Ryne C., Jansen, Camden S., Goh, Say-Tar, Mackiewicz, Mark, Newberry, Kimberly M., Brandsmeier, Laurel A., Meadows, Sarah K., Messer, C. Luke, Hardigan, Andrew A., Coppola, Candice J., Dean, Emma C., Jiang, Shan, Savic, Daniel, Mortazavi, Ali, Wold, Barbara J., Myers, Richard M., Mendenhall, Eric M.

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Circadian patterns of gene expression in the human brain and disruption in major depressive disorder von Li, Jun Z., Bunney, Blynn G., Meng, Fan, Hagenauer, Megan H., Walsh, David M., Vawter, Marquis P., Evans, Simon J., Choudary, Prabhakara V., Cartagena, Preston, Barchas, Jack D., Schatzberg, Alan F., Jones, Edward G., Myers, Richard M., Watson, Stanley J., Akil, Huda, Bunney, William E.

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Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation von Reddy, Timothy E, Pauli, Florencia, Sprouse, Rebekka O, Neff, Norma F, Newberry, Kimberly M, Garabedian, Michael J, Myers, Richard M

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