Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization von Wolff, Joachim, Bhardwaj, Vivek, Nothjunge, Stephan, Richard, Gautier, Renschler, Gina, Gilsbach, Ralf, Manke, Thomas, Backofen, Rolf, Ramírez, Fidel, Grüning, Björn A

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Characterization of Influenza D Virus Reassortant Strain in Swine from Mixed Pig and Beef Farm, France von Gorin, Stéphane, Richard, Gautier, Hervé, Séverine, Eveno, Eric, Blanchard, Yannick, Jardin, Agnès, Rose, Nicolas, Simon, Gaëlle

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Intergenerationally Maintained Histone H4 Lysine 16 Acetylation Is Instructive for Future Gene Activation von Samata, Maria, Alexiadis, Anastasios, Richard, Gautier, Georgiev, Plamen, Nuebler, Johannes, Kulkarni, Tanvi, Renschler, Gina, Basilicata, M. Felicia, Zenk, Fides Lea, Shvedunova, Maria, Semplicio, Giuseppe, Mirny, Leonid, Iovino, Nicola, Akhtar, Asifa

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Long-read assembly of the Brassica napus reference genome Darmor-bzh von Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc

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Contribution of Epigenetic Mechanisms in the Regulation of Environmentally-Induced Polyphenism in Insects von Richard, Gautier, Jaquiery, Julie, Le Trionnaire, Gael

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Epigenomic and structural events preclude recombination in Brassica napus von Boideau, Franz, Richard, Gautier, Coriton, Olivier, Huteau, Virginie, Belser, Caroline, Deniot, Gwenaelle, Eber, Frédérique, Falentin, Cyril, Ferreira de Carvalho, Julie, Gilet, Marie, Lodé‐Taburel, Maryse, Maillet, Loeiz, Morice, Jérôme, Trotoux, Gwenn, Aury, Jean‐Marc, Chèvre, Anne‐Marie, Rousseau‐Gueutin, Mathieu

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Pathogenicity and escape to pre-existing immunity of a new genotype of swine influenza H1N2 virus that emerged in France in 2020 von Deblanc, Céline, Quéguiner, Stéphane, Gorin, Stéphane, Richard, Gautier, Moro, Angélique, Barbier, Nicolas, Le Diguerher, Gérald, Paboeuf, Frédéric, Hervé, Séverine, Simon, Gaëlle

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Hypoxia response in Arabidopsis roots infected by Plasmodiophora brassicae supports the development of clubroot von Gravot, Antoine, Richard, Gautier, Lime, Tanguy, Lemarié, Séverine, Jubault, Mélanie, Lariagon, Christine, Lemoine, Jocelyne, Vicente, Jorge, Robert-Seilaniantz, Alexandre, Holdsworth, Michael J, Manzanares-Dauleux, Maria J

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Pathogenesis, Transmission, and Within-Host Evolution of Bovine-Origin Influenza D Virus in Pigs von Gorin, Stéphane, Richard, Gautier, Quéguiner, Stéphane, Chastagner, Amélie, Barbier, Nicolas, Deblanc, Céline, Hervé, Séverine, Blanchard, Yannick, Paboeuf, Frédéric, Simon, Gaëlle

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Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid von Richard, Gautier, Legeai, Fabrice, Prunier-Leterme, Nathalie, Bretaudeau, Anthony, Tagu, Denis, Jaquiéry, Julie, Le Trionnaire, Gaël

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Dopamine pathway characterization during the reproductive mode switch in the pea aphid von Le Trionnaire, Gaël, Hudaverdian, Sylvie, Richard, Gautier, Tanguy, Sylvie, Gleonnec, Florence, Prunier-Leterme, Nathalie, Gauthier, Jean-Pierre, Tagu, Denis

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Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization von Wolff, Joachim, Rabbani, Leily, Gilsbach, Ralf, Richard, Gautier, Manke, Thomas, Backofen, Rolf, Grüning, Björn A

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Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes despite extensive genome shuffling von Renschler, Gina, Richard, Gautier, Valsecchi, Claudia Isabelle Keller, Toscano, Sarah, Arrigoni, Laura, Ramírez, Fidel, Akhtar, Asifa

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Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization von Wolff, Joachim, Rabbani, Leily, Gilsbach, Ralf, Richard, Gautier, Manke, Thomas, Backofen, Rolf, Gruening, Bjoern A.

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Epigenetics and insect polyphenism: mechanisms and climate change impacts von Richard, Gautier, Le Trionnaire, Gaël, Danchin, Etienne, Sentis, Arnaud

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Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum von Fernández, Rosa, Marcet-Houben, Marina, Legeai, Fabrice, Richard, Gautier, Robin, Stéphanie, Wucher, Valentin, Pegueroles, Cinta, Gabaldón, Toni, Tagu, Denis

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An integrated protocol for targeted mutagenesis with CRISPR-Cas9 system in the pea aphid von Le Trionnaire, G., Tanguy, S., Hudaverdian, S., Gleonnec, F., Richard, G., Cayrol, B., Monsion, B., Pichon, E., Deshoux, M., Webster, C., Uzest, M., Herpin, A., Tagu, D.

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Selection following gene duplication shapes recent genome evolution in the pea aphid acyrthosiphon pisum von Fernández, Rosa, Marcet Houben, Marina, Legeai, Fabrice, Richard, Gautier, Robin, Stéphanie, Wucher, Valentin, Pegueroles Queralt, Maria Cinta, Gabaldón Estevan, Juan Antonio, 1973, Tagu, Denis

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The transposable element-rich genome of the cereal pest Sitophilus oryzae von Parisot, Nicolas, Vargas-Chavez, Carlos, Goubert, Clement, Baa-Puyoulet, Patrice, Balmand, Severine, Beranger, Louis, Blanc, Caroline, Bonnamour, Aymeric, Boulesteix, Matthieu, Burlet, Nelly, Calevro, Federica, Callaerts, Patrick, Chancy, Theo, Charles, Hubert, Colella, Stefano, Barbosa, Andre Da Silva, Dell'Aglio, Elisa, Di Genova, Alex, Febvay, Gerard, Gabaldon, Toni, Ferrarini, Mariana Galvao, Gerber, Alexandra, Gillet, Benjamin, Hubley, Robert, Hughes, Sandrine, Jacquin-Joly, Emmanuelle, Maire, Justin, Marcet-Houben, Marina, Masson, Florent, Meslin, Camille, Montagne, Nicolas, Moya, Andres, Ribeiro de Vasconcelos, Ana Tereza, Richard, Gautier, Rosen, Jeb, Sagot, Marie-France, Smit, Arian F. A., Storer, Jessica M., Vincent-Monegat, Carole, Vallier, Agnes, Vigneron, Aurelien, Zaidman-Remy, Anna, Zamoum, Wael, Vieira, Cristina, Rebollo, Rita, Latorre, Amparo, Heddi, Abdelaziz

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Dopamine pathway characterization during the reproductive mode switch in the pea aphid von Le Trionnaire, Gaël, Hudaverdian, Sylvie, Richard, Gautier, Tanguy, Sylvie, Gleonnec, Florence, Prunier-Leterme, Nathalie, Gauthier, Jean-Pierre, Tagu, Denis

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