Network typologies predict future molecular linkages in the network of HIV transmission von Rich, Shannan N, Cook, Robert L, Mavian, Carla N, Garrett, Karen, Spencer, Emma C, Salemi, Marco, Prosperi, Mattia

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Spatial and temporal analysis of HIV clinical outcomes in Florida reveals counties with persistent racial and ethnic disparities during 2012-2019 von Rich, Shannan N, Liu, Yiyang, Fisk-Hoffman, Rebecca, Zheng, Yi, Hu, Hui, Spencer, Emma E, Cook, Robert L, Prosperi, Mattia

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Risk factors for delayed viral suppression on first-line antiretroviral therapy among persons living with HIV in Haiti, 2013-2017 von Rich, Shannan N., Cook, Robert L., Yaghjyan, Lusine, Francois, Kesner, Puttkammer, Nancy, Robin, Ermane, Bae, Jungjun, Joseph, Nadjy, Pessoa-Brandao, Luisa, Delcher, Chris

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Convenience, efficacy, safety, and durability of INSTI-based antiretroviral therapies: evidence from the Italian MaSTER cohort von Rich, Shannan N., Nasta, Paola, Quiros-Roldan, Eugenia, Fusco, Paolo, Tondinelli, Alice, Costa, Cecilia, Fornabaio, Chiara, Mazzini, Nicola, Prosperi, Mattia, Torti, Carlo, Carosi, Giampiero

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Molecular Epidemiology of HIV-1 Subtype B Infection across Florida Reveals Few Large Superclusters with Metropolitan Origin von Rich, Shannan N, Prosperi, Mattia C F, Dellicour, Simon, Vrancken, Bram, Cook, Robert L, Spencer, Emma C, Salemi, Marco, Mavian, Carla

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Employing Molecular Phylodynamic Methods to Identify and Forecast HIV Transmission Clusters in Public Health Settings: A Qualitative Study von Rich, Shannan N., Richards, Veronica L., Mavian, Carla N., Switzer, William M., Rife Magalis, Brittany, Poschman, Karalee, Geary, Shana, Broadway, Steven E., Bennett, Spencer B., Blanton, Jason, Leitner, Thomas, Boatwright, J. Lucas, Stetten, Nichole E., Cook, Robert L., Spencer, Emma C., Salemi, Marco, Prosperi, Mattia

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RE: Intestinal Parasitic Infections in Human Immunodeficiency Virus-Infected and Noninfected Persons in a High Human Immunodeficiency Virus Prevalence Region of Cameroon von Rich, Shannan N

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Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions von Rich, Shannan N, Richards, Veronica, Mavian, Carla, Rife Magalis, Brittany, Grubaugh, Nathan, Rasmussen, Sonja A, Dellicour, Simon, Vrancken, Bram, Carrington, Christine, Fisk-Hoffman, Rebecca, Danso-Odei, Demi, Chacreton, Daniel, Shapiro, Jerne, Seraphin, Marie Nancy, Hepp, Crystal, Black, Allison, Dennis, Ann, Trovão, Nídia Sequeira, Vandamme, Anne-Mieke, Rasmussen, Angela, Lauzardo, Michael, Dean, Natalie, Salemi, Marco, Prosperi, Mattia

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Sociodemographic, Ecological, and Spatiotemporal Factors Associated with Human Immunodeficiency Virus Drug Resistance in Florida: A Retrospective Analysis von Rich, Shannan N, Poschman, Karalee, Hu, Hui, Mavian, Carla, Cook, Robert L, Salemi, Marco, Spencer, Emma C, Prosperi, Mattia

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Challenges in replicating secondary analysis of electronic health records data with multiple computable phenotypes: A case study on methicillin-resistant Staphylococcus aureus bact... von Jun, Inyoung, Rich, Shannan N., Chen, Zhaoyi, Bian, Jiang, Prosperi, Mattia

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Factors Contributing to Missing COVID-19 Cases During Contact Tracing von Rich, Shannan N, Richards, Veronica L, Klann, Emily M

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Impact of the 12 January 2010 earthquake on HIV case reporting in Haiti von Delcher, Chris, Bae, Jungjun, Rich, Shannan N., Klann, Emily M., Puttkammer, Nancy, Joseph, Nadjy

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Longitudinal trajectories of HIV care engagement since diagnosis among persons with HIV in the Florida Ryan White program von Liu, Yiyang, Rich, Shannan N., Siddiqi, Khairul A., Chen, Zhaoyi, Prosperi, Mattia, Spencer, Emma, Cook, Robert L.

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Associations of gut microbiome with endogenous estrogen levels in healthy postmenopausal women von Yaghjyan, Lusine, Mai, Volker, Darville, Lancia N. F., Cline, Jayden, Wang, Xuefeng, Ukhanova, Maria, Tagliamonte, Massimiliano S., Martinez, Yessica C., Rich, Shannan N., Koomen, John M., Egan, Kathleen M.

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Gut microbiome, body weight, and mammographic breast density in healthy postmenopausal women von Yaghjyan, Lusine, Mai, Volker, Wang, Xuefeng, Ukhanova, Maria, Tagliamonte, Maximiliano, Martinez, Yessica C., Rich, Shannan N., Egan, Kathleen M.

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Low‐frequency variants in mildly symptomatic vaccine breakthrough infections presents a doubled‐edged sword von Magalis, Brittany R., Mavian, Carla, Tagliamonte, Massimiliano, Rich, Shannan N., Cash, Melanie, Riva, Alberto, Loeb, Julia C., Norris, Michael, Amador, David M., Zhang, Yanping, Shapiro, Jerne, Starostik, Petr, Marini, Simone, Myers, Paul, Ostrov, David A., Lednicky, John A., Glenn Morris, J., Lauzardo, Michael, Salemi, Marco

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Development of a Prediction Model for Antibiotic-Resistant Urinary Tract Infections Using Integrated Electronic Health Records from Multiple Clinics in North-Central Florida von Rich, Shannan N., Jun, Inyoung, Bian, Jiang, Boucher, Christina, Cherabuddi, Kartik, Morris, J. Glenn, Prosperi, Mattia

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Moving from predicting hospital deaths by antibiotic-resistant bloodstream bacteremia toward actionable risk reduction using machine learning on electronic health records von Jun, Inyoung, Rich, Shannan N, Marini, Simone, Feng, Zheng, Bian, Jiang, Morris, J Glenn, Prosperi, Mattia

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Knowledge and practices related to louse‐ and flea‐borne diseases among staff providing services to people experiencing homelessness in the United States von Rich, Shannan N., Carpenter, Ann, Dell, Bree, Henderson, Rachel, Adams, Sydney, Bestul, Nicolette, Grano, Christopher, Sprague, Briana, Leopold, Josh, Schiffman, Elizabeth K., Lomeli, Andrea, Zadeh, Hassan, Alarcón, Jemma, Halai, Umme‐Aiman, Nam, Yoon‐Sung, Seifu, Leah, Slavinski, Sally, Crum, David, Mosites, Emily, Salzer, Johanna S., Hinckley, Alison F., McCormick, David W., Marx, Grace E.

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Brain tissue transcriptomic analysis of SIV-infected macaques identifies several altered metabolic pathways linked to neuropathogenesis and poly (ADP-ribose) polymerases (PARPs) as... von Mavian, Carla, Ramirez-Mata, Andrea S., Dollar, James Jarad, Nolan, David J., Cash, Melanie, White, Kevin, Rich, Shannan N., Magalis, Brittany Rife, Marini, Simone, Prosperi, Mattia C. F., Amador, David Moraga, Riva, Alberto, Williams, Kenneth C., Salemi, Marco

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