Modeling the within-host dynamics of HIV infection von Perelson, Alan S, Ribeiro, Ruy M

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Trypanosoma brucei Parasites Occupy and Functionally Adapt to the Adipose Tissue in Mice von Trindade, Sandra, Rijo-Ferreira, Filipa, Carvalho, Tânia, Pinto-Neves, Daniel, Guegan, Fabien, Aresta-Branco, Francisco, Bento, Fabio, Young, Simon A., Pinto, Andreia, Van Den Abbeele, Jan, Ribeiro, Ruy M., Dias, Sérgio, Smith, Terry K., Figueiredo, Luisa M.

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Risk of BA.5 Infection among Persons Exposed to Previous SARS-CoV-2 Variants von Malato, João, Ribeiro, Ruy M., Leite, Pedro P., Casaca, Pedro, Fernandes, Eugénia, Antunes, Carlos, Fonseca, Válter R., Gomes, Manuel C., Graca, Luis

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HIV persistence in tissue macrophages of humanized myeloid-only mice during antiretroviral therapy von Honeycutt, Jenna B, Thayer, William O, Baker, Caroline E, Ribeiro, Ruy M, Lada, Steven M, Cao, Youfang, Cleary, Rachel A, Hudgens, Michael G, Richman, Douglas D, Garcia, J Victor

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Modeling dynamics of acute HIV infection incorporating density-dependent cell death and multiplicity of infection von Mainou, Ellie, Ribeiro, Ruy M, Conway, Jessica M

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Complex decay dynamics of HIV virions, intact and defective proviruses, and 2LTR circles following initiation of antiretroviral therapy von White, Jennifer A., Simonetti, Francesco R., Beg, Subul, McMyn, Natalie F., Dai, Weiwei, Bachmann, Niklas, Lai, Jun, Ford, William C., Bunch, Christina, Jones, Joyce L., Ribeiro, Ruy. M., Perelson, Alan S., Siliciano, Janet D., Siliciano, Robert F.

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Real time bayesian estimation of the epidemic potential of emerging infectious diseases von Bettencourt, Luís M A, Ribeiro, Ruy M

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A simple model of COVID-19 explains disease severity and the effect of treatments von Sanche, Steven, Cassidy, Tyler, Chu, Pinghan, Perelson, Alan S., Ribeiro, Ruy M., Ke, Ruian

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How robust are estimates of key parameters in standard viral dynamic models? von Zitzmann, Carolin, Ke, Ruian, Ribeiro, Ruy M, Perelson, Alan S

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Introduction to modeling viral infections and immunity von Perelson, Alan S., Ribeiro, Ruy Miguel

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The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy von McMyn, Natalie F, Varriale, Joseph, Fray, Emily J, Zitzmann, Carolin, MacLeod, Hannah, Lai, Jun, Singhal, Anushka, Moskovljevic, Milica, Garcia, Mauro A, Lopez, Brianna M, Hariharan, Vivek, Rhodehouse, Kyle, Lynn, Kenneth, Tebas, Pablo, Mounzer, Karam, Montaner, Luis J, Benko, Erika, Kovacs, Colin, Hoh, Rebecca, Simonetti, Francesco R, Laird, Gregory M, Deeks, Steven G, Ribeiro, Ruy M, Perelson, Alan S, Siliciano, Robert F, Siliciano, Janet M

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Kinetics of coinfection with influenza A virus and Streptococcus pneumoniae von Smith, Amber M, Adler, Frederick R, Ribeiro, Ruy M, Gutenkunst, Ryan N, McAuley, Julie L, McCullers, Jonathan A, Perelson, Alan S

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Probabilistic control of HIV latency and transactivation by the Tat gene circuit von Cao, Youfang, 曹又方, Lei, Xue, 雷雪, Ribeiro, Ruy M., Perelson, Alan S., Liang, Jie, 梁杰

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Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion von Phan, Tin, Conway, Jessica M, Pagane, Nicole, Kreig, Jasmine, Sambaturu, Narmada, Iyaniwura, Sarafa, Li, Jonathan Z, Ribeiro, Ruy M, Ke, Ruian, Perelson, Alan S

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Treatment with integrase inhibitor suggests a new interpretation of HIV RNA decay curves that reveals a subset of cells with slow integration von Cardozo, E. Fabian, Andrade, Adriana, Mellors, John W., Kuritzkes, Daniel R., Perelson, Alan S., Ribeiro, Ruy Miguel

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CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production von Policicchio, Benjamin B., Cardozo-Ojeda, Erwing Fabian, Xu, Cuiling, Ma, Dongzhu, He, Tianyu, Raehtz, Kevin D., Sivanandham, Ranjit, Kleinman, Adam J., Perelson, Alan S., Apetrei, Cristian, Pandrea, Ivona, Ribeiro, Ruy M.

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Zika virus dynamics : effects of inoculum dose, the innate immune response and viral interference von Best, Katharine, Barouch, Dan H., Guedj, Jeremie, Ribeiro, Ruy Miguel, Perelson, Alan S.

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Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19 von Chew, Kara W., Moser, Carlee, Daar, Eric S., Wohl, David A., Li, Jonathan Z., Coombs, Robert W., Ritz, Justin, Giganti, Mark, Javan, Arzhang Cyrus, Li, Yijia, Choudhary, Manish C., Deo, Rinki, Malvestutto, Carlos, Klekotka, Paul, Price, Karen, Nirula, Ajay, Fischer, William, Bala, Veenu, Ribeiro, Ruy M., Perelson, Alan S., Fletcher, Courtney V., Eron, Joseph J., Currier, Judith S., Hughes, Michael D., Smith, Davey M.

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Antibody responses during hepatitis B viral infection von Ciupe, Stanca M, Ribeiro, Ruy M, Perelson, Alan S

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Quantifying the diversification of hepatitis C virus (HCV) during primary infection: estimates of the in vivo mutation rate von Ribeiro, Ruy M, Li, Hui, Wang, Shuyi, Stoddard, Mark B, Learn, Gerald H, Korber, Bette T, Bhattacharya, Tanmoy, Guedj, Jeremie, Parrish, Erica H, Hahn, Beatrice H, Shaw, George M, Perelson, Alan S

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