NANUQ: a method for inferring species networks from gene trees under the coalescent model von Allman, Elizabeth S, Baños, Hector, Rhodes, John A

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TINNiK: inference of the tree of blobs of a species network under the coalescent model von Allman, Elizabeth S, Baños, Hector, Mitchell, Jonathan D, Rhodes, John A

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Topological Metrizations of Trees, and New Quartet Methods of Tree Inference von Rhodes, John A.

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IDENTIFIABILITY OF PARAMETERS IN LATENT STRUCTURE MODELS WITH MANY OBSERVED VARIABLES von Allman, Elizabeth S., Matias, Catherine, Rhodes, John A.

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Gene Tree Discord, Simplex Plots, and Statistical Tests under the Coalescent von Allman, Elizabeth S, Mitchell, Jonathan D, Rhodes, John A

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MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R von Rhodes, John A, Baños, Hector, Mitchell, Jonathan D, Allman, Elizabeth S

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Parameter Identifiability of a Multitype Pure-Birth Model of Speciation von Dragomir, Dakota, Allman, Elizabeth S, Rhodes, John A

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Inferring Metric Trees from Weighted Quartets via an Intertaxon Distance von Yourdkhani, Samaneh, Rhodes, John A.

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Tensor Rank, Invariants, Inequalities, and Applications von Allman, Elizabeth S, Jarvis, Peter D, Rhodes, John A, Sumner, Jeremy G

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Anomalous networks under the multispecies coalescent: theory and prevalence von Ané, Cécile, Fogg, John, Allman, Elizabeth S., Baños, Hector, Rhodes, John A.

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Identifiability of species network topologies from genomic sequences using the logDet distance von Allman, Elizabeth S., Baños, Hector, Rhodes, John A.

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Testing Multispecies Coalescent Simulators Using Summary Statistics von Allman, Elizabeth S., Banos, Hector, Rhodes, John A.

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Parameter Identifiability for a Profile Mixture Model of Protein Evolution von Yourdkhani, Samaneh, Allman, Elizabeth S., Rhodes, John A.

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Identifiability of Level-1 Species Networks from Gene Tree Quartets von Allman, Elizabeth S., Baños, Hector, Garrote-Lopez, Marina, Rhodes, John A.

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Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent von Allman, Elizabeth S., Degnan, James H., Rhodes, John A.

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Split Scores: A Tool to Quantify Phylogenetic Signal in Genome-Scale Data von Allman, Elizabeth S., Kubatko, Laura S., Rhodes, John A.

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The tree of blobs of a species network: identifiability under the coalescent von Allman, Elizabeth S., Baños, Hector, Mitchell, Jonathan D., Rhodes, John A.

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Phylogenetic trees and Euclidean embeddings von Layer, Mark, Rhodes, John A.

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Species Tree Inference from Gene Splits by Unrooted STAR Methods von Allman, Elizabeth S., Degnan, James H., Rhodes, John A.

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A concise proof of Kruskal’s theorem on tensor decomposition von Rhodes, John A.

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