Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression von Becht, Etienne, Giraldo, Nicolas A, Lacroix, Laetitia, Buttard, Bénédicte, Elarouci, Nabila, Petitprez, Florent, Selves, Janick, Laurent-Puig, Pierre, Sautès-Fridman, Catherine, Fridman, Wolf H, de Reyniès, Aurélien

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SDH Mutations Establish a Hypermethylator Phenotype in Paraganglioma von Letouzé, Eric, Martinelli, Cosimo, Loriot, Céline, Burnichon, Nelly, Abermil, Nasséra, Ottolenghi, Chris, Janin, Maxime, Menara, Mélanie, Nguyen, An Thach, Benit, Paule, Buffet, Alexandre, Marcaillou, Charles, Bertherat, Jérôme, Amar, Laurence, Rustin, Pierre, De Reyniès, Aurélien, Gimenez-Roqueplo, Anne-Paule, Favier, Judith

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A Consensus Molecular Classification of Muscle-invasive Bladder Cancer von Kamoun, Aurélie, de Reyniès, Aurélien, Allory, Yves, Sjödahl, Gottfrid, Robertson, A. Gordon, Seiler, Roland, Hoadley, Katherine A., Groeneveld, Clarice S., Al-Ahmadie, Hikmat, Choi, Woonyoung, Castro, Mauro A.A., Fontugne, Jacqueline, Eriksson, Pontus, Mo, Qianxing, Kardos, Jordan, Zlotta, Alexandre, Hartmann, Arndt, Dinney, Colin P., Bellmunt, Joaquim, Powles, Thomas, Malats, Núria, Chan, Keith S., Kim, William Y., McConkey, David J., Black, Peter C., Dyrskjøt, Lars, Höglund, Mattias, Lerner, Seth P., Real, Francisco X., Radvanyi, François, Aine, Mattias, Al-Ahmadie, Hikmat, Allory, Yves, Bellmunt, Joaquim, Bernard-Pierrot, Isabelle, Black, Peter C., Castro, Mauro A.A., Chan, Keith S., Choi, Woonyoung, Czerniak, Bogdan, Dinney, Colin P., Dyrskjøt, Lars, Eriksson, Pontus, Fontugne, Jacqueline, Gibb, Ewan A., Groeneveld, Clarice S., Hartmann, Arndt, Hoadley, Katherine A., Höglund, Mattias, Kamoun, Aurélie, Kardos, Jordan, Kim, Jaegil, Kim, William Y., Kwiatkowski, David J., Lebret, Thierry, Lerner, Seth P., Liedberg, Fredrik, Malats, Núria, McConkey, David J., Mo, Qianxing, Powles, Thomas, Radvanyi, François, Real, Francisco X., de Reyniès, Aurélien, Robertson, A. Gordon, Siefker-Radtke, Arlene, Sirab, Nanor, Seiler, Roland, Sjödahl, Gottfrid, Taber, Ann, Weinstein, John, Zlotta, Alexandre

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Dissecting heterogeneity in malignant pleural mesothelioma through histo-molecular gradients for clinical applications von Blum, Yuna, Meiller, Clément, Quetel, Lisa, Elarouci, Nabila, Ayadi, Mira, Tashtanbaeva, Danisa, Armenoult, Lucile, Montagne, François, Tranchant, Robin, Renier, Annie, de Koning, Leanne, Copin, Marie-Christine, Hofman, Paul, Hofman, Véronique, Porte, Henri, Le Pimpec-Barthes, Françoise, Zucman-Rossi, Jessica, Jaurand, Marie-Claude, de Reyniès, Aurélien, Jean, Didier

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The consensus molecular subtypes of colorectal cancer von Guinney, Justin, Dienstmann, Rodrigo, Wang, Xin, de Reyniès, Aurélien, Schlicker, Andreas, Soneson, Charlotte, Marisa, Laetitia, Roepman, Paul, Nyamundanda, Gift, Angelino, Paolo, Bot, Brian M, Morris, Jeffrey S, Simon, Iris M, Gerster, Sarah, Fessler, Evelyn, De Sousa E Melo, Felipe, Missiaglia, Edoardo, Ramay, Hena, Barras, David, Homicsko, Krisztian, Maru, Dipen, Manyam, Ganiraju C, Broom, Bradley, Boige, Valerie, Perez-Villamil, Beatriz, Laderas, Ted, Salazar, Ramon, Gray, Joe W, Hanahan, Douglas, Tabernero, Josep, Bernards, Rene, Friend, Stephen H, Laurent-Puig, Pierre, Medema, Jan Paul, Sadanandam, Anguraj, Wessels, Lodewyk, Delorenzi, Mauro, Kopetz, Scott, Vermeulen, Louis, Tejpar, Sabine

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Gene expression classification of colon cancer into molecular subtypes: characterization, validation, and prognostic value von Marisa, Laetitia, de Reyniès, Aurélien, Duval, Alex, Selves, Janick, Gaub, Marie Pierre, Vescovo, Laure, Etienne-Grimaldi, Marie-Christine, Schiappa, Renaud, Guenot, Dominique, Ayadi, Mira, Kirzin, Sylvain, Chazal, Maurice, Fléjou, Jean-François, Benchimol, Daniel, Berger, Anne, Lagarde, Arnaud, Pencreach, Erwan, Piard, Françoise, Elias, Dominique, Parc, Yann, Olschwang, Sylviane, Milano, Gérard, Laurent-Puig, Pierre, Boige, Valérie

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Independent Component Analysis Uncovers the Landscape of the Bladder Tumor Transcriptome and Reveals Insights into Luminal and Basal Subtypes von Biton, Anne, Bernard-Pierrot, Isabelle, Lou, Yinjun, Krucker, Clémentine, Chapeaublanc, Elodie, Rubio-Pérez, Carlota, López-Bigas, Nuria, Kamoun, Aurélie, Neuzillet, Yann, Gestraud, Pierre, Grieco, Luca, Rebouissou, Sandra, de Reyniès, Aurélien, Benhamou, Simone, Lebret, Thierry, Southgate, Jennifer, Barillot, Emmanuel, Allory, Yves, Zinovyev, Andrei, Radvanyi, François

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Integrated genomic characterization of adrenocortical carcinoma von Assié, Guillaume, Letouzé, Eric, Fassnacht, Martin, Jouinot, Anne, Luscap, Windy, Barreau, Olivia, Omeiri, Hanin, Rodriguez, Stéphanie, Perlemoine, Karine, René-Corail, Fernande, Elarouci, Nabila, Sbiera, Silviu, Kroiss, Matthias, Allolio, Bruno, Waldmann, Jens, Quinkler, Marcus, Mannelli, Massimo, Mantero, Franco, Papathomas, Thomas, De Krijger, Ronald, Tabarin, Antoine, Kerlan, Véronique, Baudin, Eric, Tissier, Frédérique, Dousset, Bertrand, Groussin, Lionel, Amar, Laurence, Clauser, Eric, Bertagna, Xavier, Ragazzon, Bruno, Beuschlein, Felix, Libé, Rossella, de Reyniès, Aurélien, Bertherat, Jérôme

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Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes von Lomberk, Gwen, Blum, Yuna, Nicolle, Rémy, Nair, Asha, Gaonkar, Krutika Satish, Marisa, Laetitia, Mathison, Angela, Sun, Zhifu, Yan, Huihuang, Elarouci, Nabila, Armenoult, Lucile, Ayadi, Mira, Ordog, Tamas, Lee, Jeong-Heon, Oliver, Gavin, Klee, Eric, Moutardier, Vincent, Gayet, Odile, Bian, Benjamin, Duconseil, Pauline, Gilabert, Marine, Bigonnet, Martin, Garcia, Stephane, Turrini, Olivier, Delpero, Jean-Robert, Giovannini, Marc, Grandval, Philippe, Gasmi, Mohamed, Secq, Veronique, De Reyniès, Aurélien, Dusetti, Nelson, Iovanna, Juan, Urrutia, Raul

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Integrated molecular characterization of chondrosarcoma reveals critical determinants of disease progression von Nicolle, Rémy, Ayadi, Mira, Gomez-Brouchet, Anne, Armenoult, Lucile, Banneau, Guillaume, Elarouci, Nabila, Tallegas, Matthias, Decouvelaere, Anne-Valérie, Aubert, Sébastien, Rédini, Françoise, Marie, Béatrice, Labit-Bouvier, Corinne, Reina, Nicolas, Karanian, Marie, le Nail, Louis-Romée, Anract, Philippe, Gouin, François, Larousserie, Frédérique, de Reyniès, Aurélien, de Pinieux, Gonzague

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Recurrent activating mutations of PPARγ associated with luminal bladder tumors von Rochel, Natacha, Krucker, Clémentine, Coutos-Thévenot, Laure, Osz, Judit, Zhang, Ruiyun, Guyon, Elodie, Zita, Wayne, Vanthong, Séverin, Hernandez, Oscar Alba, Bourguet, Maxime, Badawy, Kays Al, Dufour, Florent, Peluso-Iltis, Carole, Heckler-Beji, Syrine, Dejaegere, Annick, Kamoun, Aurélie, de Reyniès, Aurélien, Neuzillet, Yann, Rebouissou, Sandra, Béraud, Claire, Lang, Hervé, Massfelder, Thierry, Allory, Yves, Cianférani, Sarah, Stote, Roland H., Radvanyi, François, Bernard-Pierrot, Isabelle

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Multi-omics analysis defines core genomic alterations in pheochromocytomas and paragangliomas von Castro-Vega, Luis Jaime, Letouzé, Eric, Burnichon, Nelly, Buffet, Alexandre, Disderot, Pierre-Hélie, Khalifa, Emmanuel, Loriot, Céline, Elarouci, Nabila, Morin, Aurélie, Menara, Mélanie, Lepoutre-Lussey, Charlotte, Badoual, Cécile, Sibony, Mathilde, Dousset, Bertrand, Libé, Rossella, Zinzindohoue, Franck, Plouin, Pierre François, Bertherat, Jérôme, Amar, Laurence, de Reyniès, Aurélien, Favier, Judith, Gimenez-Roqueplo, Anne-Paule

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Gene-expression profiling of systemic anaplastic large-cell lymphoma reveals differences based on ALK status and two distinct morphologic ALK+ subtypes von Lamant, Laurence, de Reyniès, Aurélien, Duplantier, Marie-Michèle, Rickman, David S., Sabourdy, Frédérique, Giuriato, Sylvie, Brugières, Laurence, Gaulard, Philippe, Espinos, Estelle, Delsol, Georges

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Establishment of a pancreatic adenocarcinoma molecular gradient (PAMG) that predicts the clinical outcome of pancreatic cancer von Nicolle, Rémy, Blum, Yuna, Duconseil, Pauline, Vanbrugghe, Charles, Brandone, Nicolas, Poizat, Flora, Roques, Julie, Bigonnet, Martin, Gayet, Odile, Rubis, Marion, Elarouci, Nabila, Armenoult, Lucile, Ayadi, Mira, de Reyniès, Aurélien, Giovannini, Marc, Grandval, Philippe, Garcia, Stephane, Canivet, Cindy, Cros, Jérôme, Bournet, Barbara, Buscail, Louis, Moutardier, Vincent, Gilabert, Marine, Iovanna, Juan, Dusetti, Nelson

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The Warburg effect is genetically determined in inherited pheochromocytomas von Favier, Judith, Brière, Jean-Jacques, Burnichon, Nelly, Rivière, Julie, Vescovo, Laure, Benit, Paule, Giscos-Douriez, Isabelle, De Reyniès, Aurélien, Bertherat, Jérôme, Badoual, Cécile, Tissier, Frédérique, Amar, Laurence, Libé, Rosella, Plouin, Pierre-François, Jeunemaitre, Xavier, Rustin, Pierre, Gimenez-Roqueplo, Anne-Paule

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Wnt, glucocorticoid and cellular prion protein cooperate to drive a mesenchymal phenotype with poor prognosis in colon cancer von Mouillet-Richard, Sophie, Gougelet, Angélique, Passet, Bruno, Brochard, Camille, Le Corre, Delphine, Pitasi, Caterina Luana, Joubel, Camille, Sroussi, Marine, Gallois, Claire, Lavergne, Julien, Castille, Johan, Vilotte, Marthe, Daniel-Carlier, Nathalie, Pilati, Camilla, de Reyniès, Aurélien, Djouadi, Fatima, Colnot, Sabine, André, Thierry, Taieb, Julien, Vilotte, Jean-Luc, Romagnolo, Béatrice, Laurent-Puig, Pierre

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Exquisite sensitivity of TP53 mutant and basal breast cancers to a dose-dense epirubicin-cyclophosphamide regimen von Bertheau, Philippe, Turpin, Elisabeth, Rickman, David S, Espié, Marc, de Reyniès, Aurélien, Feugeas, Jean-Paul, Plassa, Louis-François, Soliman, Hany, Varna, Mariana, de Roquancourt, Anne, Lehmann-Che, Jacqueline, Beuzard, Yves, Marty, Michel, Misset, Jean-Louis, Janin, Anne, de Thé, Hugues

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DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification von Decamps, Clémentine, Arnaud, Alexis, Petitprez, Florent, Ayadi, Mira, Baurès, Aurélia, Armenoult, Lucile, Alcala, N., Arnaud, A., Avila Cobos, F., Batista, Luciana, Batto, A.-F., Blum, Y., Chuffart, F., Cros, J., Decamps, C., Dirian, L., Doncevic, D., Durif, G., Bahena Hernandez, S. Y., Jakobi, M., Jardillier, R., Jeanmougin, M., Jedynak, P., Jumentier, B., Kakoichankava, A., Kondili, Maria, Liu, J., Maie, T., Marécaille, J., Merlevede, J., Meylan, M., Nazarov, P., Newar, K., Nyrén, K., Petitprez, F., Novella Rausell, C., Richard, M., Scherer, M., Sompairac, N., Waury, K., Xie, T., Zacharouli, M.-A., Escalera, Sergio, Guyon, Isabelle, Nicolle, Rémy, Tomasini, Richard, de Reyniès, Aurélien, Cros, Jérôme, Blum, Yuna, Richard, Magali

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Gene Expression Profiling of Muscle Stem Cells Identifies Novel Regulators of Postnatal Myogenesis von Alonso-Martin, Sonia, Rochat, Anne, Mademtzoglou, Despoina, Morais, Jessica, de Reyniès, Aurélien, Auradé, Frédéric, Chang, Ted Hung-Tse, Zammit, Peter S, Relaix, Frédéric

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Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer von Meylan, Maxime, Petitprez, Florent, Becht, Etienne, Bougoüin, Antoine, Pupier, Guilhem, Calvez, Anne, Giglioli, Ilenia, Verkarre, Virginie, Lacroix, Guillaume, Verneau, Johanna, Sun, Chen-Ming, Laurent-Puig, Pierre, Vano, Yann-Alexandre, Elaïdi, Reza, Méjean, Arnaud, Sanchez-Salas, Rafaël, Barret, Eric, Cathelineau, Xavier, Oudard, Stephane, Reynaud, Claude-Agnès, de Reyniès, Aurélien, Sautès-Fridman, Catherine, Fridman, Wolf Herman

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