GEOfetch: a command-line tool for downloading data and standardized metadata from GEO and SRA von Khoroshevskyi, Oleksandr, LeRoy, Nathan, Reuter, Vincent P, Sheffield, Nathan C

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TCR signal strength defines distinct mechanisms of T cell dysfunction and cancer evasion von Shakiba, Mojdeh, Zumbo, Paul, Espinosa-Carrasco, Gabriel, Menocal, Laura, Dündar, Friederike, Carson, Sandra E, Bruno, Emmanuel M, Sanchez-Rivera, Francisco J, Lowe, Scott W, Camara, Steven, Koche, Richard P, Reuter, Vincent P, Socci, Nicholas D, Whitlock, Benjamin, Tamzalit, Fella, Huse, Morgan, Hellmann, Matthew D, Wells, Daniel K, Defranoux, Nadine A, Betel, Doron, Philip, Mary, Schietinger, Andrea

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2-hydroxyglutarate inhibits MyoD-mediated differentiation by preventing H3K9 demethylation von Schvartzman, Juan-Manuel, Reuter, Vincent P., Koche, Richard P., Thompson, Craig B.

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L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer von Ganesh, Karuna, Basnet, Harihar, Kaygusuz, Yasemin, Laughney, Ashley M, He, Lan, Sharma, Roshan, O'Rourke, Kevin P, Reuter, Vincent P, Huang, Yun-Han, Turkekul, Mesruh, Er, Ekrem Emrah, Masilionis, Ignas, Manova-Todorova, Katia, Weiser, Martin R, Saltz, Leonard B, Garcia-Aguilar, Julio, Koche, Richard, Lowe, Scott W, Pe'er, Dana, Shia, Jinru, Massagué, Joan

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PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments von Smith, Jason P, Corces, M Ryan, Xu, Jin, Reuter, Vincent P, Chang, Howard Y, Sheffield, Nathan C

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Refgenie: a reference genome resource manager von Stolarczyk, Michał, Reuter, Vincent P, Smith, Jason P, Magee, Neal E, Sheffield, Nathan C

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Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects von Sheffield, Nathan C, Stolarczyk, Michał, Reuter, Vincent P, Rendeiro, André F

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Author Correction: L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer von Ganesh, Karuna, Basnet, Harihar, Kaygusuz, Yasemin, Laughney, Ashley M, He, Lan, Sharma, Roshan, O'Rourke, Kevin P, Reuter, Vincent P, Huang, Yun-Han, Turkekul, Mesruh, Er, Ekrem Emrah, Masilionis, Ignas, Manova-Todorova, Katia, Weiser, Martin R, Saltz, Leonard B, Garcia-Aguilar, Julio, Koche, Richard, Lowe, Scott W, Pe'er, Dana, Shia, Jinru, Massagué, Joan

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The chromatin accessibility landscape of primary human cancers von Corces, M Ryan, Granja, Jeffrey M, Shams, Shadi, Louie, Bryan H, Seoane, Jose A, Zhou, Wanding, Silva, Tiago C, Groeneveld, Clarice, Wong, Christopher K, Cho, Seung Woo, Satpathy, Ansuman T, Mumbach, Maxwell R, Hoadley, Katherine A, Robertson, A Gordon, Sheffield, Nathan C, Felau, Ina, Castro, Mauro A A, Berman, Benjamin P, Staudt, Louis M, Zenklusen, Jean C, Laird, Peter W, Curtis, Christina, Greenleaf, William J, Chang, Howard Y

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Supporting data for "Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects" von Nathan, Sheffield C., Michał, Stolarczyk, Vincent, Reuter P., Andre, Rendeiro F

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Supporting data for "Refgenie: a reference genome resource manager" von Jason, Smith P., Michał, Stolarczyk, Nathan, Sheffield C., Neal, Magee E., Vincent, Reuter P.

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Brain plasticity and sensorimotor deterioration as a function of 70 days head down tilt bed rest von Koppelmans, Vincent, Bloomberg, Jacob J, De Dios, Yiri E, Wood, Scott J, Reuter-Lorenz, Patricia A, Kofman, Igor S, Riascos, Roy, Mulavara, Ajitkumar P, Seidler, Rachael D

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Hyperpolarized MRI of Human Prostate Cancer Reveals Increased Lactate with Tumor Grade Driven by Monocarboxylate Transporter 1 von Granlund, Kristin L., Tee, Sui-Seng, Vargas, Hebert A., Lyashchenko, Serge K., Reznik, Ed, Fine, Samson, Laudone, Vincent, Eastham, James A., Touijer, Karim A., Reuter, Victor E., Gonen, Mithat, Sosa, Ramon E., Nicholson, Duane, Guo, YanWei W., Chen, Albert P., Tropp, James, Robb, Fraser, Hricak, Hedvig, Keshari, Kayvan R.

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Effect of Noninvasive Ventilation vs Oxygen Therapy on Mortality Among Immunocompromised Patients With Acute Respiratory Failure: A Randomized Clinical Trial von Lemiale, Virginie, Mokart, Djamel, Resche-Rigon, Matthieu, Pène, Frédéric, Mayaux, Julien, Faucher, Etienne, Nyunga, Martine, Girault, Christophe, Perez, Pierre, Guitton, Christophe, Ekpe, Kenneth, Kouatchet, Achille, Théodose, Igor, Benoit, Dominique, Canet, Emmanuel, Barbier, François, Rabbat, Antoine, Bruneel, Fabrice, Vincent, Francois, Klouche, Kada, Loay, Kontar, Mariotte, Eric, Bouadma, Lila, Moreau, Anne-Sophie, Seguin, Amélie, Meert, Anne-Pascale, Reignier, Jean, Papazian, Laurent, Mehzari, Ilham, Cohen, Yves, Schenck, Maleka, Hamidfar, Rebecca, Darmon, Michael, Demoule, Alexandre, Chevret, Sylvie, Azoulay, Elie

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Exercise effects on bed rest-induced brain changes von Koppelmans, Vincent, Scott, Jessica M, Downs, Meghan E, Cassady, Kaitlin E, Yuan, Peng, Pasternak, Ofer, Wood, Scott J, De Dios, Yiri E, Gadd, Nichole E, Kofman, Igor, Riascos, Roy, Reuter-Lorenz, Patricia A, Bloomberg, Jacob J, Mulavara, Ajitkumar P, Ploutz-Snyder, Lori L, Seidler, Rachael D

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SWI/SNF Complex Mutations Promote Thyroid Tumor Progression and Insensitivity to Redifferentiation Therapies von Saqcena, Mahesh, Leandro-Garcia, Luis Javier, Maag, Jesper L V, Tchekmedyian, Vatche, Krishnamoorthy, Gnana P, Tamarapu, Prasanna P, Tiedje, Vera, Reuter, Vincent, Knauf, Jeffrey A, de Stanchina, Elisa, Xu, Bin, Liao, Xiao-Hui, Refetoff, Samuel, Ghossein, Ronald, Chi, Ping, Ho, Alan L, Koche, Richard P, Fagin, James A

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Gene-based Confirmatory Germline Testing Following Tumor-only Sequencing of Prostate Cancer von Truong, Hong, Breen, Kelsey, Nandakumar, Subhiksha, Sjoberg, Daniel D., Kemel, Yelena, Mehta, Nikita, Lenis, Andrew T., Reisz, Peter A., Carruthers, Jessica, Benfante, Nicole, Joseph, Vijai, Khurram, Aliya, Gopalan, Anuradha, Fine, Samson W., Reuter, Victor E., Vickers, Andrew J., Birsoy, Ozge, Liu, Ying, Walsh, Michael, Latham, Alicia, Mandelker, Diana, Stadler, Zsofia K., Pietzak, Eugene, Ehdaie, Behfar, Touijer, Karim A., Laudone, Vincent P., Slovin, Susan F., Autio, Karen A., Danila, Daniel C., Rathkopf, Dana E., Eastham, James A., Chen, Yu, Morris, Michael J., Offit, Kenneth, Solit, David B., Scher, Howard I., Abida, Wassim, Robson, Mark E., Carlo, Maria I.

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Brightest Cluster Galaxy Formation in the z = 4.3 Protocluster SPT 2349-56: Discovery of a Radio-loud Active Galactic Nucleus von Chapman, Scott C., Hill, Ryley, Aravena, Manuel, Archipley, Melanie, Babul, Arif, Burgoyne, James, Canning, Rebecca E. A., Deane, Roger P., De Breuck, Carlos, Gonzalez, Anthony H., Hayward, Christopher C., Kim, Seon Woo, Malkan, Matt, Marrone, Dan P., McIntyre, Vincent, Murphy, Eric, Pass, Emily, Perry, Ryan W., Phadke, Kedar A., Rennehan, Douglas, Reuter, Cassie, Rotermund, Kaja M., Scott, Douglas, Seymour, Nick, Solimano, Manuel, Spilker, Justin, Stark, Anthony A., Sulzenauer, Nikolaus, Tothill, Nick, Vieira, Joaquin D., Vizgan, David, Wang, George, Weiss, Axel

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Intracranial Fluid Redistribution But No White Matter Microstructural Changes During a Spaceflight Analog von Koppelmans, Vincent, Pasternak, Ofer, Bloomberg, Jacob J., Dios, Yiri E. De, Wood, Scott J., Riascos, Roy, Reuter-Lorenz, Patricia A., Kofman, Igor S., Mulavara, Ajitkumar P., Seidler, Rachael D.

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Quantification of Gleason Pattern 4 Metrics Identifies Pathologic Progression in Patients With Grade Group 2 Prostate Cancer on Active Surveillance von Perera, Marlon, Assel, Melissa, Nalavenkata, Sunny, Khaleel, Sari, Benfante, Nicole, Carlsson, Sigrid V., Reuter, Victor E., Laudone, Vincent P., Scardino, Peter T., Touijer, Karim A., Eastham, James A., Vickers, Andrew J., Fine, Samson W., Ehdaie, Behfar

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