Detection and characterization of lung cancer using cell-free DNA fragmentomes von Mathios, Dimitrios, Johansen, Jakob Sidenius, Cristiano, Stephen, Medina, Jamie E., Phallen, Jillian, Larsen, Klaus R., Bruhm, Daniel C., Niknafs, Noushin, Ferreira, Leonardo, Adleff, Vilmos, Chiao, Jia Yuee, Leal, Alessandro, Noe, Michael, White, James R., Arun, Adith S., Hruban, Carolyn, Annapragada, Akshaya V., Jensen, Sarah Østrup, Ørntoft, Mai-Britt Worm, Madsen, Anders Husted, Carvalho, Beatriz, de Wit, Meike, Carey, Jacob, Dracopoli, Nicholas C., Maddala, Tara, Fang, Kenneth C., Hartman, Anne-Renee, Forde, Patrick M., Anagnostou, Valsamo, Brahmer, Julie R., Fijneman, Remond J. A., Nielsen, Hans Jørgen, Meijer, Gerrit A., Andersen, Claus Lindbjerg, Mellemgaard, Anders, Bojesen, Stig E., Scharpf, Robert B., Velculescu, Victor E.

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Data-Independent Acquisition Mass Spectrometry Analysis of FFPE Rectal Cancer Samples Offers In-Depth Proteomics Characterization of the Response to Neoadjuvant Chemoradiotherapy von Stanojevic, Aleksandra, Samiotaki, Martina, Lygirou, Vasiliki, Marinkovic, Mladen, Nikolic, Vladimir, Stojanovic-Rundic, Suzana, Jankovic, Radmila, Vlahou, Antonia, Panayotou, George, Fijneman, Remond J. A., Castellví-Bel, Sergi, Zoidakis, Jerome, Cavic, Milena

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CIBRA identifies genomic alterations with a system-wide impact on tumor biology von Lakbir, Soufyan, Buranelli, Caterina, Meijer, Gerrit A, Heringa, Jaap, Fijneman, Remond J A, Abeln, Sanne

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Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer von Jacobsen, Annika, Bosch, Linda J. W., Martens-de Kemp, Sanne R., Carvalho, Beatriz, Sillars-Hardebol, Anke H., Dobson, Richard J., de Rinaldis, Emanuele, Meijer, Gerrit A., Abeln, Sanne, Heringa, Jaap, Fijneman, Remond J. A., Feenstra, K. Anton

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Silencing Core Spliceosome Sm Gene Expression Induces a Cytotoxic Splicing Switch in the Proteasome Subunit Beta 3 mRNA in Non-Small Cell Lung Cancer Cells von Blijlevens, Maxime, Komor, Malgorzata A., Sciarrillo, Rocco, Smit, Egbert F., Fijneman, Remond J. A., van Beusechem, Victor W.

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Cancer treatment monitoring using cell-free DNA fragmentomes von van ’t Erve, Iris, Alipanahi, Bahar, Lumbard, Keith, Skidmore, Zachary L., Rinaldi, Lorenzo, Millberg, Laurel K., Carey, Jacob, Chesnick, Bryan, Cristiano, Stephen, Portwood, Carter, Wu, Tony, Peters, Erica, Bolhuis, Karen, Punt, Cornelis J. A., Tom, Jennifer, Bach, Peter B., Dracopoli, Nicholas C., Meijer, Gerrit A., Scharpf, Robert B., Velculescu, Victor E., Fijneman, Remond J. A., Leal, Alessandro

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KCNQ1 and lymphovascular invasion are key features in a prognostic classifier for stage II and III colon cancer von Uil, Sjoerd H, Coupé, Veerle M H, Bril, Herman, Meijer, Gerrit A, Fijneman, Remond J A, Stockmann, Hein B A C

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Cell-Free Circulating (Tumor) DNA before Surgery as a Prognostic Factor in Non-Metastatic Colorectal Cancer: A Systematic Review von Schraa, Suzanna J, van Rooijen, Karlijn L, Koopman, Miriam, Vink, Geraldine R, Fijneman, Remond J A

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A scenario‐drafting study to explore potential future implementation pathways of circulating tumor DNA testing in oncology von Kramer, Astrid, Rubio‐Alarcón, Carmen, Broek, Daan, Vessies, Daan C. L., van't Erve, Iris, Meijer, Gerrit A., Vink, Geraldine R., Schuuring, Ed, Fijneman, Remond J. A., Coupé, Veerle M. H., Retèl, Valesca P.

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High expression of secretory leukocyte protease inhibitor (SLPI) in stage III micro-satellite stable colorectal cancer is associated with reduced disease recurrence von Nugteren, Sandrine, den Uil, Sjoerd H., Delis-van Diemen, Pien M., Simons-Oosterhuis, Ytje, Lindenbergh-Kortleve, Dicky J., van Haaften, Daniëlle H., Stockmann, Hein B. A. C., Sanders, Joyce, Meijer, Gerrit A., Fijneman, Remond J. A., Samsom, Janneke N.

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Comparison of NTRK fusion detection methods in microsatellite-instability-high metastatic colorectal cancer von Schraa, Suzanna J., Stelloo, Ellen, Laclé, Miangela M., Swennenhuis, Joost F., Brosens, Lodewijk A. A., Fijneman, Remond J. A., Feitsma, Harma, Koopman, Miriam, de Leng, Wendy W., Vink, Geraldine R., Bol, Guus M.

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TPX2 and AURKA promote 20q amplicon-driven colorectal adenoma to carcinoma progression von Sillars-Hardebol, Anke H, Carvalho, Beatriz, Tijssen, Marianne, Beliën, Jeroen A M, de Wit, Meike, Delis-van Diemen, Pien M, Pontén, Fredrik, van de Wiel, Mark A, Fijneman, Remond J A, Meijer, Gerrit A

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Loss of enteric neuronal Ndrg4 promotes colorectal cancer via increased release of Nid1 and Fbln2 von Vaes, Nathalie, Schonkeren, Simone L, Rademakers, Glenn, Holland, Amy M, Koch, Alexander, Gijbels, Marion J, Keulers, Tom G, de Wit, Meike, Moonen, Laura, Van der Meer, Jaleesa R M, van den Boezem, Edith, Wolfs, Tim G A M, Threadgill, David W, Demmers, Jeroen, Fijneman, Remond J A, Jimenez, Connie R, Vanden Berghe, Pieter, Smits, Kim M, Rouschop, Kasper M A, Boesmans, Werend, Hofstra, Robert M W, Melotte, Veerle

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Lumican and versican protein expression are associated with colorectal adenoma-to-carcinoma progression von de Wit, Meike, Carvalho, Beatriz, Delis-van Diemen, Pien M, van Alphen, Carolien, Beliën, Jeroen A M, Meijer, Gerrit A, Fijneman, Remond J A

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Exploring novel genetic and hematological predictors of response to neoadjuvant chemoradiotherapy in locally advanced rectal cancer von Marinkovic, Mladen, Stojanovic-Rundic, Suzana, Stanojevic, Aleksandra, Ostojic, Marija, Gavrilovic, Dusica, Jankovic, Radmila, Maksimovic, Natasa, Stroggilos, Rafael, Zoidakis, Jerome, Castellví-Bel, Sergi, Fijneman, Remond J A, Cavic, Milena

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Methylenetetrahydrofolate reductase polymorphic variants C677T and A1298C in rectal cancer in Slavic population: significance for cancer risk and response to chemoradiotherapy von Stanojevic, Aleksandra, Spasic, Jelena, Marinkovic, Mladen, Stojanovic-Rundic, Suzana, Jankovic, Radmila, Djuric, Ana, Zoidakis, Jerome, Fijneman, Remond J A, Castellvi-Bel, Sergi, Cavic, Milena

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Performance and Dimensionality of Pretreatment MRI Radiomics in Rectal Carcinoma Chemoradiotherapy Prediction von Marinkovic, Mladen, Stojanovic-Rundic, Suzana, Stanojevic, Aleksandra, Tomasevic, Aleksandar, Jankovic, Radmila, Zoidakis, Jerome, Castellví-Bel, Sergi, Fijneman, Remond J A, Cavic, Milena, Radulovic, Marko

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Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify von Komor, Malgorzata A., Pham, Thang V., Hiemstra, Annemieke C., Piersma, Sander R., Bolijn, Anne S., Schelfhorst, Tim, Delis-van Diemen, Pien M., Tijssen, Marianne, Sebra, Robert P., Ashby, Meredith, Meijer, Gerrit A., Jimenez, Connie R., Fijneman, Remond J.A.

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High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer von van den Broek, Evert, Dijkstra, Maurits J J, Krijgsman, Oscar, Sie, Daoud, Haan, Josien C, Traets, Joleen J H, van de Wiel, Mark A, Nagtegaal, Iris D, Punt, Cornelis J A, Carvalho, Beatriz, Ylstra, Bauke, Abeln, Sanne, Meijer, Gerrit A, Fijneman, Remond J A

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Prognostic value of microvessel density in stage II and III colon cancer patients: a retrospective cohort study von den Uil, Sjoerd H, van den Broek, Evert, Coupé, Veerle M H, Vellinga, Thomas T, Delis-van Diemen, Pien M, Bril, Herman, Belt, Eric J Th, Kranenburg, Onno, Stockmann, Hein B A C, Belien, Jeroen A M, Meijer, Gerrit A, Fijneman, Remond J A

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