Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster von Oliver, Brian, Lieb, Jason D, Disteche, Christine M, Deng, Xinxian, Hiatt, Joseph B, Nguyen, Di Kim, Ercan, Sevinc, Sturgill, David, Hillier, LaDeana W, Schlesinger, Felix, Davis, Carrie A, Reinke, Valerie J, Gingeras, Thomas R, Shendure, Jay, Waterston, Robert H

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Comparative Toxicity of Seven Aqueous Film‐Forming Foam to In Vitro Systems and Mus von East, Andrew G., Narizzano, Allison M., Holden, Lindsay A., Bazar, Matthew A., Bohannon, Meredith E., Pervitsky, Dmitry, Adams, Valerie H., Reinke, Emily N., Quinn, Michael J.

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Comparative analysis of regulatory information and circuits across distant species von Boyle, Alan P., Araya, Carlos L., Brdlik, Cathleen, Cayting, Philip, Cheng, Chao, Cheng, Yong, Gardner, Kathryn, Hillier, LaDeana W., Janette, Judith, Jiang, Lixia, Kasper, Dionna, Kawli, Trupti, Kheradpour, Pouya, Kundaje, Anshul, Li, Jingyi Jessica, Ma, Lijia, Niu, Wei, Rehm, E. Jay, Rozowsky, Joel, Slattery, Matthew, Spokony, Rebecca, Terrell, Robert, Vafeados, Dionne, Wang, Daifeng, Weisdepp, Peter, Wu, Yi-Chieh, Xie, Dan, Yan, Koon-Kiu, Feingold, Elise A., Good, Peter J., Pazin, Michael J., Huang, Haiyan, Bickel, Peter J., Brenner, Steven E., Reinke, Valerie, Waterston, Robert H., Gerstein, Mark, White, Kevin P., Kellis, Manolis, Snyder, Michael

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A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory von Katz, David J., Edwards, T. Matthew, Reinke, Valerie, Kelly, William G.

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A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans von Engelmann, Ilka, Griffon, Aurélien, Tichit, Laurent, Montañana-Sanchis, Frédéric, Wang, Guilin, Reinke, Valerie, Waterston, Robert H, Hillier, LaDeana W, Ewbank, Jonathan J

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A Global Profile of Germline Gene Expression in C. elegans von Reinke, Valerie, Smith, Harold E., Nance, Jeremy, Wang, John, Van Doren, Carrie, Begley, Rebecca, Jones, Steven J.M., Davis, Elizabeth B., Scherer, Stewart, Ward, Samuel, Kim, Stuart K.

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The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors von Kudron, Michelle M, Victorsen, Alec, Gevirtzman, Louis, Hillier, LaDeana W, Fisher, William W, Vafeados, Dionne, Kirkey, Matt, Hammonds, Ann S, Gersch, Jeffery, Ammouri, Haneen, Wall, Martha L, Moran, Jennifer, Steffen, David, Szynkarek, Matt, Seabrook-Sturgis, Samantha, Jameel, Nader, Kadaba, Madhura, Patton, Jaeda, Terrell, Robert, Corson, Mitch, Durham, Timothy J, Park, Soo, Samanta, Swapna, Han, Mei, Xu, Jinrui, Yan, Koon-Kiu, Celniker, Susan E, White, Kevin P, Ma, Lijia, Gerstein, Mark, Reinke, Valerie, Waterston, Robert H

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Coordinate Activation of Maternal Protein Degradation during the Egg-to-Embryo Transition in C. elegans von Pellettieri, Jason, Reinke, Valerie, Kim, Stuart K., Seydoux, Geraldine

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Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project von Gerstein, Mark B, Lu, Zhi John, Van Nostrand, Eric L, Cheng, Chao, Liu, Tao, Yip, Kevin Y, Robilotto, Rebecca, Rechtsteiner, Andreas, Ikegami, Kohta, Alves, Pedro, Chateigner, Aurelien, Morris, Mitzi, Feng, Xin, Leng, Jing, Vielle, Anne, Niu, Wei, Rhrissorrakrai, Kahn, Alexander, Roger P, Barber, Galt, Brdlik, Cathleen M, Brennan, Jennifer, Brouillet, Jeremy Jean, Carr, Adrian, Cheung, Ming-Sin, Clawson, Hiram, Contrino, Sergio, Dannenberg, Luke O, Dernburg, Abby F, Dosé, Andréa C, Egelhofer, Thea, Euskirchen, Ghia, Ewing, Brent, Gassmann, Reto, Good, Peter J, Green, Phil, Gullier, Francois, Gutwein, Michelle, Habegger, Lukas, Henikoff, Jorja G, Henz, Stefan R, Hinrichs, Angie, Hyman, Tony, Iniguez, A. Leo, Janette, Judith, Jensen, Morten, Kato, Masaomi, Kent, W. James, Kephart, Ellen, Khurana, Ekta, Kim, John K, Lai, Eric C, Latorre, Isabel, Lewis, Suzanna, Lloyd, Paul, Lochovsky, Lucas, Lubling, Yaniv, Lyne, Rachel, MacCoss, Michael, Mackowiak, Sebastian D, Mangone, Marco, McKay, Sheldon, Mecenas, Desirea, Merrihew, Gennifer, Miller, David M. III, Muroyama, Andrew, Murray, John I, Ooi, Siew-Loon, Pham, Hoang, Phippen, Taryn, Rajewsky, Nikolaus, Rätsch, Gunnar, Rosenbaum, Heidi, Ruzanov, Peter, Sboner, Andrea, Scheid, Paul, Shou, Chong, Slack, Frank J, Slightam, Cindie, Spencer, William C, Stinson, E.O, Vafeados, Dionne, Voronina, Ksenia, Wang, Guilin, Washington, Nicole L, Whittle, Christina M, Wu, Beijing, Yan, Koon-Kiu, Zeller, Georg, Zhong, Mei, Zhou, Xingliang, Strome, Susan, Gunsalus, Kristin C, Micklem, Gos, Liu, X. Shirley, Kim, Stuart K, Henikoff, Steven, Piano, Fabio, Snyder, Michael, Stein, Lincoln, Waterston, Robert H

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Genome-Wide Analysis of Developmental and Sex-Regulated Gene Expression Profiles in Caenorhabditis elegans von Jiang, Min, Ryu, Jubin, Kiraly, Monika, Duke, Kyle, Reinke, Valerie, Kim, Stuart K.

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Integrating Interactome, Phenome, and Transcriptome Mapping Data for the C. elegans Germline von Walhout, Albertha J.M., Reboul, Jérôme, Shtanko, Olena, Bertin, Nicolas, Vaglio, Philippe, Ge, Hui, Lee, Hongmei, Doucette-Stamm, Lynn, Gunsalus, Kristin C., Schetter, Aaron J., Morton, Diane G., Kemphues, Kenneth J., Reinke, Valerie, Kim, Stuart K., Piano, Fabio, Vidal, Marc

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Rescue of embryonic lethality in Mdm4 -null mice by loss of Trp53 suggests a nonoverlapping pathway with MDM2 to regulate p53 von Lozano, Guillermina, Parant, John, Chavez-Reyes, Arturo, Little, Natalie A, Yan, Wen, Reinke, Valerie, Jochemsen, Aart G

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Gene Clustering Based on RNAi Phenotypes of Ovary-Enriched Genes in C. elegans von Piano, Fabio, Schetter, Aaron J., Morton, Diane G., Gunsalus, Kristin C., Reinke, Valerie, Kim, Stuart K., Kemphues, Kenneth J.

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Regulation of Tissue-Specific and Extracellular Matrix-Related Genes by a Class I Histone Deacetylase von Whetstine, Johnathan R., Ceron, Julian, Ladd, Brendon, Dufourcq, Pascale, Reinke, Valerie, Shi, Yang

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Genome-wide analysis of developmental and sex-regulated gene expression profiles in Caenorhabditis elegans von Jiang, Min, Ryu, Jubin, Kiraly, Monika, Duke, Kyle, Reinke, Valerie, Kim, Stuart K.

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C. elegans sym-1 is a downstream target of the Hunchback-like-1 developmental timing transcription factor von Niwa, Ryusuke, Hada, Kazumasa, Moliyama, Kouichi, Ohniwa, Ryosuke L., Tan, Yi-Meng, Carter, Katherine Olsson, Chi, Woo, Reinke, Valerie, Slack, Frank J.

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New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones von Fernandez, Anita G, Gunsalus, Kristin C, Huang, Jerry, Chuang, Ling-Shiang, Ying, Nancy, Liang, Hsiao-Lan, Tang, Caroline, Schetter, Aaron J, Zegar, Charles, Rual, Jean-François, Hill, David E, Reinke, Valerie, Vidal, Marc, Piano, Fabio

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Genome-wide analysis of sex-enriched gene expression during C. elegans larval development von Thoemke, Kara, Yi, Woelsung, Ross, Jennifer M., Kim, Shinseog, Reinke, Valerie, Zarkower, David

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Comparative Analysis of the Transcriptome Across Distant Species von Gerstein, Mark B, Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B, Davis, Carrie A, Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O, Duff, Michael O, Djebali, Sarah, Alexander, Roger P, Alver, Burak, Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J, Boeck, Max E, Boley, Nathan P, Booth, Benjamin W, Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A, Frankish, Adam, Gao, Guanjun, Good, Peter J, Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A, Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P, Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C, Kitchen, Robert R, Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M, Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter, Pazin, Michael J, Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I, Schlesinger, Felix, Sethi, Anurag, Slack, Frank J, Spencer, William C, Stoiber, Marcus H, Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A, Wan, Kenneth H, Wang, Guilin, Wang, Huaien, Watkins, Kathie L, Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E, Graveley, Brenton R, Celniker, Susan E, Gingeras, Thomas R, Waterston, Robert

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Comparative Analysis of the Transcriptome across Distant Species von Gerstein, Mark B, Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B, Davis, Carrie A, Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O, Duff, Michael O, Djebali, Sarah, Alexander, Roger P, Alver, Burak H, Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J, Boeck, Max E, Boley, Nathan P, Booth, Benjamin W, Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A, Frankish, Adam, Gao, Guanjun, Good, Peter J, Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A, Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P, Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C, Kitchen, Robert R, Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M, Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter J, Pazin, Michael J, Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I, Schlesinger, Felix, Sethi, Anurag, Slack, Frank J, Spencer, William C, Stoiber, Marcus H, Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A, Wan, Kenneth H, Wang, Guilin, Wang, Huaien, Watkins, Kathie L, Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E, Graveley, Brenton R, Celniker, Susan E, Gingeras, Thomas R, Waterston, Robert

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