Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic von Reimering, Susanne, Muñoz, Sebastian, McHardy, Alice C

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Cellular Importin-α3 Expression Dynamics in the Lung Regulate Antiviral Response Pathways against Influenza A Virus Infection von Thiele, Swantje, Stanelle-Bertram, Stephanie, Beck, Sebastian, Kouassi, Nancy Mounogou, Zickler, Martin, Müller, Martin, Tuku, Berfin, Resa-Infante, Patricia, van Riel, Debby, Alawi, Malik, Günther, Thomas, Rother, Franziska, Hügel, Stefanie, Reimering, Susanne, McHardy, Alice, Grundhoff, Adam, Brune, Wolfram, Osterhaus, Albert, Bader, Michael, Hartmann, Enno, Gabriel, Gülsah

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Peptide microarrays coupled to machine learning reveal individual epitopes from human antibody responses with neutralizing capabilities against SARS-CoV-2 von Hotop, Sven-Kevin, Reimering, Susanne, Shekhar, Aditya, Asgari, Ehsaneddin, Beutling, Ulrike, Dahlke, Christine, Fathi, Anahita, Khan, Fawad, Lütgehetmann, Marc, Ballmann, Rico, Gerstner, Andreas, Tegge, Werner, Cicin-Sain, Luka, Bilitewski, Ursula, McHardy, Alice C., Brönstrup, Mark

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Sweep Dynamics (SD) plots: Computational identification of selective sweeps to monitor the adaptation of influenza A viruses von Klingen, Thorsten R., Reimering, Susanne, Loers, Jens, Mooren, Kyra, Klawonn, Frank, Krey, Thomas, Gabriel, Gülsah, McHardy, Alice C.

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Cellular Importin-α3 Expression Dynamics in the Lung Regulate Antiviral Response Pathways against Influenza A Virus Infection von Thiele, Swantje, Stanelle-Bertram, Stephanie, Beck, Sebastian, Kouassi, Nancy Mounogou, Zickler, Martin, Müller, Martin, Tuku, Berfin, Resa-Infante, Patricia, van Riel, Debby, Alawi, Malik, Günther, Thomas, Rother, Franziska, Hügel, Stefanie, Reimering, Susanne, McHardy, Alice, Grundhoff, Adam, Brune, Wolfram, Osterhaus, Albert, Bader, Michael, Hartmann, Enno, Gabriel, Gülsah

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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research von Hufsky, Franziska, Lamkiewicz, Kevin, Almeida, Alexandre, Aouacheria, Abdel, Arighi, Cecilia, Bateman, Alex, Baumbach, Jan, Beerenwinkel, Niko, Brandt, Christian, Cacciabue, Marco, Chuguransky, Sara, Drechsel, Oliver, Finn, Robert D, Fritz, Adrian, Fuchs, Stephan, Hattab, Georges, Hauschild, Anne-Christin, Heider, Dominik, Hoffmann, Marie, Hölzer, Martin, Hoops, Stefan, Kaderali, Lars, Kalvari, Ioanna, von Kleist, Max, Kmiecinski, Renó, Kühnert, Denise, Lasso, Gorka, Libin, Pieter, List, Markus, Löchel, Hannah F, Martin, Maria J, Martin, Roman, Matschinske, Julian, McHardy, Alice C, Mendes, Pedro, Mistry, Jaina, Navratil, Vincent, Nawrocki, Eric P, O’Toole, Áine Niamh, Ontiveros-Palacios, Nancy, Petrov, Anton I, Rangel-Pineros, Guillermo, Redaschi, Nicole, Reimering, Susanne, Reinert, Knut, Reyes, Alejandro, Richardson, Lorna, Robertson, David L, Sadegh, Sepideh, Singer, Joshua B, Theys, Kristof, Upton, Chris, Welzel, Marius, Williams, Lowri, Marz, Manja

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In Silico Vaccine Strain Prediction for Human Influenza Viruses von Klingen, Thorsten R., Reimering, Susanne, Guzmán, Carlos A., McHardy, Alice C.

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Software for Characterizing the Antigenic and Genetic Evolution of Human Influenza Viruses von Reimering, Susanne, McHardy, Alice C.

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A Fréchet tree distance measure to compare phylogeographic spread paths across trees von Reimering, Susanne, Muñoz, Sebastian, McHardy, Alice C.

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From contigs towards chromosomes: automatic improvement of long read assemblies (ILRA) von Ruiz, José Luis, Reimering, Susanne, Escobar-Prieto, Juan David, Brancucci, Nicolas M B, Echeverry, Diego F, Abdi, Abdirahman I, Marti, Matthias, Gómez-Díaz, Elena, Otto, Thomas D

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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research von Hufsky, Franziska, Lamkiewicz, Kevin, Almeida, Alexandre, Aouacheria, Abdel, Arighi, Cecilia, Bateman, Alex, Baumbach, Jan, Beerenwinkel, Niko, Brandt, Christian, Cacciabue, Marco, Chuguransky, Sara, Drechsel, Oliver, Finn, Robert D, Fritz, Adrian, Fuchs, Stephan, Hattab, Georges, Hauschild, Anne-Christin, Heider, Dominik, Hoffmann, Marie, Hoelzer, Martin, Hoops, Stefan, Kaderali, Lars, Kalvari, Ioanna, von Kleist, Max, Kmiecinski, Reno, Kuehnert, Denise, Lasso, Gorka, Libin, Pieter, List, Markus, Loechel, Hannah F, Martin, Maria J, Martin, Roman, Matschinske, Julian, McHardy, Alice C, Mendes, Pedro, Mistry, Jaina, Navratil, Vincent, Nawrocki, Eric P, O'Toole, Aine Niamh, Ontiveros-Palacios, Nancy, Petrov, Anton, Rangel-Pineros, Guillermo, Redaschi, Nicole, Reimering, Susanne, Reinert, Knut, Reyes, Alejandro, Richardson, Lorna, Robertson, David L, Sadegh, Sepideh, Singer, Joshua B, Theys, Kristof, Upton, Chris, Welzel, Marius, Williams, Lowri, Marz, Manja

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CoVerage Results von Norwood, Katrina, Deng, Zhi-Luo, Reimering, Susanne, Robertson, Gary, Foroughmand-Araabi, Mohammad-Hadi, Goliaei, Sama, Hölzer, Martin, McHardy, Alice

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Distance matrices for parsimonious phylogeography von Reimering, Susanne, Munoz, Sebastian, McHardy, Alice

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Peptide microarrays coupled to machine learning reveal individual epitopes from human antibody responses with neutralizing capabilities against SARS-CoV-2 von Hotop, Sven-Kevin, Reimering, Susanne, Shekhar, Aditya, Asgari, Ehsaneddin, Beutling, Ulrike, Dahlke, Christine, Fathi, Anahita, Khan, Fawad, Lütgehetmann, Marc, Ballmann, Rico, Gerstner, Andreas, Tegge, Werner, Cicin-Sain, Luka, Bilitewski, Ursula, McHardy, Alice C., Brönstrup, Mark

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