DeepPeptide predicts cleaved peptides in proteins using conditional random fields von Teufel, Felix, Refsgaard, Jan Christian, Madsen, Christian Toft, Stahlhut, Carsten, Grønborg, Mads, Winther, Ole, Madsen, Dennis

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Impact of microRNA-130a on the neutrophil proteome von Pedersen, Corinna Cavan, Refsgaard, Jan Christian, Østergaard, Ole, Jensen, Lars Juhl, Heegaard, Niels Henrik Helweg, Borregaard, Niels, Cowland, Jack Bernard

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Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites von Lundby, Alicia, Franciosa, Giulia, Emdal, Kristina B., Refsgaard, Jan C., Gnosa, Sebastian P., Bekker-Jensen, Dorte B., Secher, Anna, Maurya, Svetlana R., Paul, Indranil, Mendez, Blanca L., Kelstrup, Christian D., Francavilla, Chiara, Kveiborg, Marie, Montoya, Guillermo, Jensen, Lars J., Olsen, Jesper V.

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Combining mass spectrometry and machine learning to discover bioactive peptides von Madsen, Christian T., Refsgaard, Jan C., Teufel, Felix G., Kjærulff, Sonny K., Wang, Zhe, Meng, Guangjun, Jessen, Carsten, Heljo, Petteri, Jiang, Qunfeng, Zhao, Xin, Wu, Bo, Zhou, Xueping, Tang, Yang, Jeppesen, Jacob F., Kelstrup, Christian D., Buckley, Stephen T., Tullin, Søren, Nygaard-Jensen, Jan, Chen, Xiaoli, Zhang, Fang, Olsen, Jesper V., Han, Dan, Grønborg, Mads, de Lichtenberg, Ulrik

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Deorphanizing Peptides Using Structure Prediction von Teufel, Felix, Refsgaard, Jan C., Kasimova, Marina A., Deibler, Kristine, Madsen, Christian T., Stahlhut, Carsten, Grønborg, Mads, Winther, Ole, Madsen, Dennis

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Avoiding abundance bias in the functional annotation of post-translationally modified proteins von Schölz, Christian, Lyon, David, Refsgaard, Jan C, Jensen, Lars Juhl, Choudhary, Chunaram, Weinert, Brian T

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Avoiding abundance bias in the functional annotation of posttranslationally modified proteins von Schölz, Christian, Lyon, David, Refsgaard, Jan C, Jensen, Lars Juhl, Choudhary, Chunaram, Weinert, Brian T

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Clinical and proteomic profiles of chronic kidney disease in heart failure with reduced and preserved ejection fraction von Voordes, Geert H.D., Voors, Adriaan A., Hoegl, Annabelle, Madsen, Christian T., van Essen, Bart J., Ouwerkerk, Wouter, Tromp, Jasper, de la Rambelje, Mark A., Grønborg, Mads, Refsgaard, Jan C., Lang, Chim C., Barascuk-Michaelsen, Natasha, Damman, Kevin

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RAIN: RNA–protein Association and Interaction Networks von Junge, Alexander, Refsgaard, Jan C., Garde, Christian, Pan, Xiaoyong, Santos, Alberto, Alkan, Ferhat, Anthon, Christian, von Mering, Christian, Workman, Christopher T., Jensen, Lars Juhl, Gorodkin, Jan

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The Baltic Sea as a time machine for the future coastal ocean von Reusch, Thorsten B H, Dierking, Jan, Andersson, Helen C, Bonsdorff, Erik, Carstensen, Jacob, Casini, Michele, Czajkowski, Mikolaj, Hasler, Berit, Hinsby, Klaus, Hyytiäinen, Kari, Johannesson, Kerstin, Jomaa, Seifeddine, Jormalainen, Veijo, Kuosa, Harri, Kurland, Sara, Laikre, Linda, MacKenzie, Brian R, Margonski, Piotr, Melzner, Frank, Oesterwind, Daniel, Ojaveer, Henn, Refsgaard, Jens Christian, Sandström, Annica, Schwarz, Gerald, Tonderski, Karin, Winder, Monika, Zandersen, Marianne

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Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites von Lundby, Alicia, Franciosa, Giulia, Emdal, Kristina B, Refsgaard, Jan C, Gnosa, Sebastian P, Bekker-jensen, Dorte B, Secher, Anna, Maurya, Svetlana R, Paul, Indranil, Mendez, Blanca L, Kelstrup, Christian D, Francavilla, Chiara, Kveiborg, Marie, Montoya, Guillermo, Jensen, Lars J, Olsen, Jesper V

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RAIN: RNA-protein Association and Interaction Networks von Junge, Alexander, Refsgaard, Jan C, Garde, Christian, Pan, Xiaoyong, Santos, Alberto, Alkan, Ferhat, Anthon, Christian, von Mering, Christian, Workman, Christopher T, Jensen, Lars Juhl, Gorodkin, Jan

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RAIN v1 von Junge, Alexander, Refsgaard, Jan C., Garde, Christian, Xiaoyong Pan, Santos, Alberto, Alkan, Ferhat, Anthon, Christian, Mering, Christian Von, Workman, Christopher T., Jensen, Lars Juhl, Gorodkin, Jan

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