Genome-Based Prediction of Bacterial Antibiotic Resistance von Su, Michelle, Satola, Sarah W, Read, Timothy D

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Chlamydia suis undergoes interclade recombination promoting Tet-island exchange von Seth-Smith, Helena, Bommana, Sankhya, Dean, Deborah, Read, Timothy D, Marti, Hanna

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Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes von Petit, Robert A., Read, Timothy D.

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The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection von Vanderwoude, Jelly, Azimi, Sheyda, Read, Timothy D, Diggle, Stephen P

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Staphylococcus aureus viewed from the perspective of 40,000+ genomes von Petit, 3rd, Robert A, Read, Timothy D

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Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa von Bernardy, Eryn E., Petit, Robert A., Raghuram, Vishnu, Alexander, Ashley M., Read, Timothy D., Goldberg, Joanna B.

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Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes von Mehta, Rohan S, Petit, 3rd, Robert A, Read, Timothy D, Weissman, Daniel B

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Structures of Neisseria gonorrhoeae MtrR-operator complexes reveal molecular mechanisms of DNA recognition and antibiotic resistance-conferring clinical mutations von Beggs, Grace A, Ayala, Julio C, Kavanaugh, Logan G, Read, Timothy D, Hooks, Grace M, Schumacher, Maria A, Shafer, William M, Brennan, Richard G

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Corrigendum: Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis von Joseph, Sandeep J, Bommana, Sankhya, Ziklo, Noa, Kama, Mike, Dean, Deborah, Read, Timothy D

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Transcriptional activation of ompA in Neisseria gonorrhoeae mediated by the XRE family member protein NceR von Holley, Concerta L, Dhulipala, Vijaya, Maurakis, Stavaros A, Greenawalt, Ashley Nicole, Read, Timothy D, Cornelissen, Cynthia N, Shafer, William M

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Unique microbial diversity, community composition, and networks among Pacific Islander endocervical and vaginal microbiomes with and without Chlamydia trachomatis infection in Fiji von Bommana, Sankhya, Hu, Yi-Juan, Kama, Mike, Wang, Ruohong, Kodimerla, Reshma, Jijakli, Kenan, Read, Timothy D, Dean, Deborah

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Draft sequencing and assembly of the genome of the world's largest fish, the whale shark: Rhincodon typus Smith 1828 von Read, Timothy D, Petit, 3rd, Robert A, Joseph, Sandeep J, Alam, Md Tauqeer, Weil, M Ryan, Ahmad, Maida, Bhimani, Ravila, Vuong, Jocelyn S, Haase, Chad P, Webb, D Harry, Tan, Milton, Dove, Alistair D M

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Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants von Diaz, Maureen H, Desai, Heta P, Morrison, Shatavia S, Benitez, Alvaro J, Wolff, Bernard J, Caravas, Jason, Read, Timothy D, Dean, Deborah, Winchell, Jonas M

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Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis von Joseph, Sandeep J, Bommana, Sankhya, Ziklo, Noa, Kama, Mike, Dean, Deborah, Read, Timothy D

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Protocol for the Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort Study von Corwin, Elizabeth J, Hogue, Carol J, Pearce, Bradley, Hill, Cherie C, Read, Timothy D, Mulle, Jennifer, Dunlop, Anne L

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Scaffolding and validation of bacterial genome assemblies using optical restriction maps von Nagarajan, Niranjan, Read, Timothy D., Pop, Mihai

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Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women von Dunlop, Anne L., Satten, Glen A., Hu, Yi-Juan, Knight, Anna K., Hill, Cherie C., Wright, Michelle L., Smith, Alicia K., Read, Timothy D., Pearce, Bradley D., Corwin, Elizabeth J.

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Factors associated with foreign body infection in methicillin-resistant Staphylococcus aureus bacteremia von Bouiller, Kevin, Jacko, Natasia F, Shumaker, Margot J, Talbot, Brooke M, Read, Timothy D, David, Michael Z

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Transmission and microevolution of USA300 MRSA in U.S. households: evidence from whole-genome sequencing von Alam, Md Tauqeer, Read, Timothy D, Petit, 3rd, Robert A, Boyle-Vavra, Susan, Miller, Loren G, Eells, Samantha J, Daum, Robert S, David, Michael Z

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'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens von Worby, Colin J, Read, Timothy D

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