Evaluation of Whole-Genome Sequencing for Mycobacterial Species Identification and Drug Susceptibility Testing in a Clinical Setting: a Large-Scale Prospective Assessment of Perfor... von Quan, T Phuong, Bawa, Zharain, Foster, Dona, Walker, Tim, Del Ojo Elias, Carlos, Rathod, Priti, Iqbal, Zamin, Bradley, Phelim, Mowbray, Janet, Walker, A Sarah, Crook, Derrick W, Wyllie, David H, Peto, Timothy E A, Smith, E Grace

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A Quantitative Evaluation of MIRU-VNTR Typing Against Whole-Genome Sequencing for Identifying Mycobacterium tuberculosis Transmission: A Prospective Observational Cohort Study von Wyllie, David H., Davidson, Jennifer A., Grace Smith, E., Rathod, Priti, Crook, Derrick W., Peto, Tim E.A., Robinson, Esther, Walker, Tim, Campbell, Colin

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The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis von Walker, Timothy M, Köser, Claudio U, Knaggs, Jeff, Farhat, Maha R, Cirillo, Daniela Maria, Posey, James, Peto, Timothy EA, Uplekar, Swapna, Laurent, Sacha, Colman, Rebecca E, Nathanson, Carl-Michael, Walker, Ann Sarah, Rodwell, Timothy C, Lalvani, Ajit, Baulard, Alain, Christoffels, Alan, Mendoza-Ticona, Alberto, Trovato, Alberto, Lachapelle, Alexander S, Brankin, Alice, Koch, Anastasia, Brandao, Angela P, Chaiprasert, Angkana, Barbova, Anna, Bainomugisa, Arnold, Rodrigues, Camilla, Nimmo, Camus, Duncan, Carla, Coulter, Christopher, Utpatel, Christian, Liu, Chunfa, Grazian, Clara, Kong, Clare, Köser, Claudio U, Wilson, Daniel J, Jorgensen, Danielle, Crook, Derrick W, van Soolingen, Dick, Barreira, Draurio, Ngcamu, Dumisani, Kelly, Ellis, Roycroft, Emma, Böttger, Erik C, Menardo, Fabrizio, Mendes, Flavia F, Gao, George Fu, Thwaites, Guy, Albert, Heidi, Cox, Helen, Laurenson, Ian F, Barilar, Ivan, Robledo, Jaime, Gardy, Jennifer, Carter, Joshua, Kus, Julianne V, Todt, Katharina, Nilgiriwala, Kayzad S, Ghisi, Kelen T, Malone, Kerri M, Faksri, Kiatichai, Musser, Kimberlee A, Joseph, Lavania, Jarrett, Lisa, Grandjean, Louis, Schito, Marco, Wijkander, Maria, Rabodoarivelo, Marie-Sylvianne, Mihalic, Marina, Hunt, Martin, Egger, Matthias, Wu, Mei-Hua, Mansjö, Mikael, ISMAIL, Nazir, Rakotosamimanana, Niaina, Paton, Nicholas I, Miotto, Paolo, Lapierre, Pascal, Colman, Rebecca E, Wilkinson, Robert J, Diel, Roland, Oliveira, Rosangela S, Khot, Rukhsar, Tahseen, Sabira, Plesnik, Sara, Mitarai, Satoshi, Kohl, Thomas A, Thuong, Nguyen T T, Teo, Tik Ying, Rodwell, Timothy C, William, Timothy, Walker, Timothy M, Surve, Utkarsha, Vijay, Srinivasan, Escuyer, Vincent, Dreyer, Viola, Lin, Wan-Hsuan, van Gemert, Wayne, Yang, Yang, Zhao, Yanlin, Xiao, Yu-Xin

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A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics von Brankin, Alice, Malone, Kerri M., Barilar, Ivan, Battaglia, Simone, Borroni, Emanuele, Pires Brandao, Angela, Cabibbe, Andrea Maurizio, Carter, Joshua, Chetty, Darren, Cirillo, Daniela María, Claxton, Pauline, Clifton, David A., Cohen, Ted, Coronel, Jorge, Crook, Derrick W., Dreyer, Viola, Earle, Sarah G., Escuyer, Vincent, Ferrazoli, Lucilaine, Gāo, George Fú, Gardy, Jennifer, Gharbia, Saheer, Teixeira Ghisi, Kelen, Ghodousi, Arash, Gibertoni Cruz, Ana Lúıza, Grandjean, Louis, Grazian, Clara, Groenheit, Ramona, Guthrie, Jennifer L., He, Wencong, Hoffmann, Harald, J., Sarah Hoosdally, Hunt, Martin, Ismail, Nazir Ahmed, Jarrett, Lisa, Joseph, Lavania, Jou, Ruwen, Kambli, Priti, Khot, Rukhsar, Knaggs, Jeff, Koch, Anastasia, Kohlerschmidt, Donna, Kouchaki, Samaneh, Lachapelle, Alexander S., Lalvani, Ajit, Grandjean Lapierre, Simon, Laurenson, Ian F., Letcher, Brice, Lin, Wan-Hsuan, Liu, Chunfa, Liu, Dongxin, Mandal, Ayan, Mansjö, Mikael, Matias, Daniela, Meintjes, Graeme, de Freitas Mendes, Flávia, Merker, Matthias, Mihalic, Marina, Millard, James, Miotto, Paolo, Mistry, Nerges, Moore, David, Musser, Kimberlee A., Ngcamu, Dumisani, Ngoc Nhung, Hoang, Niemann, Stefan, Soli Nilgiriwala, Kayzad, Nimmo, Camus, O'Donnell, Max, Okozi, Nana, Siqueira Oliveira, Rosangela, Omar, Shaheed Vally, Paton, Nicholas, Peto, Timothy Ea, Watanabe Pinhata, Juliana Maira, Plesnik, Sara, Puyen, Zully M., Rabodoarivelo, Marie Sylvianne, Rakotosamimanana, Niaina, Rancoita, Paola M.V., Rathod, Priti, Robinson, Esther, Rodger, Gillian, Rodrigues, Camilla, Rodwell, Timothy C., Roohi, Aysha, Santos-Lazaro, David, Shah, Sanchi, Kohl, Thomas Andreas, Smith, Grace A., Solano, Walter, Spitaleri, Andrea, Supply, Philip, Steyn, Adrie J.C., Surve, Utkarsha, Tahseen, Sabira, Thuong, Nguyen Thuy, Thwaites, Guy, Todt, Katharina, Trovato, Alberto

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Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms von Consortium, The Cryptic, Supply, Philip

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Validating a 14-Drug Microtiter Plate Containing Bedaquiline and Delamanid for Large-Scale Research Susceptibility Testing of Mycobacterium tuberculosis von Rancoita, Paola M V, Cugnata, Federica, Gibertoni Cruz, Ana Luíza, Borroni, Emanuele, Hoosdally, Sarah J, Walker, Timothy M, Grazian, Clara, Davies, Timothy J, Peto, Timothy E A, Crook, Derrick W, Fowler, Philip W, Cirillo, Daniela M

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Application of machine learning techniques to tuberculosis drug resistance analysis von Kouchaki, Samaneh, Yang, Yang, Walker, Timothy M, Sarah Walker, A, Wilson, Daniel J, Peto, Timothy E A, Crook, Derrick W, Clifton, David A

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Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis von CRyPTIC Consortium, The CRyPTIC Consortium

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Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach von Barilar, Ivan, Battaglia, Simone, Borroni, Emanuele, Brandao, Angela Pires, Brankin, Alice, Cabibbe, Andrea Maurizio, Carter, Joshua, Chetty, Darren, Cirillo, Daniela Maria, Claxton, Pauline, Clifton, David A., Cohen, Ted, Coronel, Jorge, Crook, Derrick W., Dreyer, Viola, Earle, Sarah G., Escuyer, Vincent, Ferrazoli, Lucilaine, Fowler, Philip W., Gao, George Fu, Gardy, Jennifer, Gharbia, Saheer, Ghisi, Kelen Teixeira, Ghodousi, Arash, Gibertoni Cruz, Ana Luíza, Grandjean, Louis, Grazian, Clara, Groenheit, Ramona, Guthrie, Jennifer L., He, Wencong, Hoffmann, Harald, Hoosdally, Sarah J., Hunt, Martin, Iqbal, Zamin, Ismail, Nazir Ahmed, Jarrett, Lisa, Joseph, Lavania, Jou, Ruwen, Kambli, Priti, Khot, Rukhsar, Knaggs, Jeff, Koch, Anastasia, Kohlerschmidt, Donna, Kouchaki, Samaneh, Lachapelle, Alexander S., Lalvani, Ajit, Lapierre, Simon Grandjean, Laurenson, Ian F., Letcher, Brice, Lin, Wan-Hsuan, Liu, Chunfa, Liu, Dongxin, Malone, Kerri M., Mandal, Ayan, Mansjö, Mikael, Calisto Matias, Daniela Vicente Lucena, Meintjes, Graeme, de Freitas Mendes, Flávia, Merker, Matthias, Mihalic, Marina, Millard, James, Miotto, Paolo, Mistry, Nerges, Moore, David, Musser, Kimberlee A., Ngcamu, Dumisani, Nhung, Hoang Ngoc, Niemann, Stefan, Nilgiriwala, Kayzad Soli, Nimmo, Camus, O’Donnell, Max, Okozi, Nana, Oliveira, Rosangela Siqueira, Omar, Shaheed Vally, Paton, Nicholas, Peto, Timothy E. A., Pinhata, Juliana Maira Watanabe, Plesnik, Sara, Puyen, Zully M., Rabodoarivelo, Marie Sylvianne, Rakotosamimanana, Niaina, Rancoita, Paola M. V., Rathod, Priti, Robinson, Esther Rhiannon, Rodger, Gillian, Rodrigues, Camilla, Rodwell, Timothy C., Roohi, Aysha, Santos-Lazaro, David, Shah, Sanchi, Smith, Grace, Kohl, Thomas Andreas, Solano, Walter, Spitaleri, Andrea, Steyn, Adrie J. C., Supply, Philip, Surve, Utkarsha, Tahseen, Sabira, Thuong, Nguyen Thuy Thuong, Thwaites, Guy

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DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis von Yang, Yang, Walker, Timothy M, Walker, A Sarah, Wilson, Daniel J, Peto, Timothy E A, Crook, Derrick W, Shamout, Farah, Zhu, Tingting, Clifton, David A

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DNA Thermo-Protection Facilitates Whole-Genome Sequencing of Mycobacteria Direct from Clinical Samples von George, Sophie, Xu, Yifei, Rodger, Gillian, Morgan, Marcus, Sanderson, Nicholas D., Hoosdally, Sarah J., Thulborn, Samantha, Robinson, Esther, Rathod, Priti, Walker, A. Sarah, Peto, Timothy E. A., Crook, Derrick W., Dingle, Kate E.

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Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis von Fowler, Philip W, Gibertoni Cruz, Ana Luíza, Hoosdally, Sarah J, Jarrett, Lisa, Borroni, Emanuele, Chiacchiaretta, Matteo, Rathod, Priti, Lehmann, Sarah, Molodtsov, Nikolay, Walker, Timothy M, Robinson, Esther, Hoffmann, Harald, Peto, Timothy E A, Cirillo, Daniela Maria, Smith, Grace E, Crook, Derrick W

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A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilutio... von Fowler, Philip W, Wright, Carla, Spiers, Helen, Zhu, Tingting, Baeten, Elisabeth M L, Hoosdally, Sarah W, Gibertoni Cruz, Ana L, Roohi, Aysha, Kouchaki, Samaneh, Walker, Timothy M, Peto, Timothy E A, Miller, Grant, Lintott, Chris, Clifton, David, Crook, Derrick W, Walker, A Sarah

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Identifying Mixed Mycobacterium tuberculosis Infection and Laboratory Cross-Contamination during Mycobacterial Sequencing Programs von Wyllie, David H, Robinson, Esther, Peto, Tim, Crook, Derrick W, Ajileye, Adebisi, Rathod, Priti, Allen, Rosemarie, Jarrett, Lisa, Smith, E Grace, Walker, A Sarah

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Influence of Plant Growth Regulators and Jeevamrut on Morphological and Yield Parameters of Pigeonpea (Cajanus cajan L.) von D. V. Durge, Madhuri B. Dhomne, T. H. Rathod, Priti A. Sonkamble

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Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis von Sonnenkalb, Lindsay, Carter, Joshua James, Hunt, Martin, Malone, Kerri Marie, Cirillo, Daniela Maria, Rodrigues, Camilla, Nilgiriwala, Kayzad Soli, Fowler, Philip William, Merker, Matthias, Niemann, Stefan, Barilar, Ivan, Battaglia, Simone, Borroni, Emanuele, Cabibbe, Andrea Maurizio, Carter, Joshua, Cirillo, Daniela Maria, Claxton, Pauline, Coronel, Jorge, Crook, Derrick W, Dreyer, Viola, Earle, Sarah G, Ferrazoli, Lucilaine, Fu Gao, George, Gardy, Jennifer, Gharbia, Saheer, Ghodousi, Arash, Gibertoni Cruz, Ana Luíza, Grandjean, Louis, Groenheit, Ramona, He, Wencong, Hoosdally, Sarah J, Hunt, Martin, Iqbal, Zamin, Ismail, Nazir Ahmed, Jarrett, Lisa, Joseph, Lavania, Jou, Ruwen, Kambli, Priti, Knaggs, Jeff, Koch, Anastasia, Kohlerschmidt, Donna, Kouchaki, Samaneh, Lachapelle, Alexander S, Grandjean Lapierre, Simon, Laurenson, Ian F, Letcher, Brice, Lin, Wan-Hsuan, Liu, Dongxin, Mandal, Ayan, Mansjö, Mikael, Matias, Daniela, Meintjes, Graeme, de Freitas Mendes, Flávia, Merker, Matthias, Millard, James, Miotto, Paolo, Mistry, Nerges, Moore, David, Musser, Kimberlee A, Hoang, Ngoc Nhung, Niemann, Stefan, Nilgiriwala, Kayzad Soli, Nimmo, Camus, Okozi, Nana, Oliveira, Rosangela Siqueira, Omar, Shaheed Vally, Peto, Timothy EA, Watanabe Pinhata, Juliana Maira, Plesnik, Sara, Puyen, Zully M, Rakotosamimanana, Niaina, Rathod, Priti, Rodger, Gillian, Rodrigues, Camilla, Santos-Lazaro, David, Shah, Sanchi, Kohl, Thomas Andreas, Smith, Grace, Solano, Walter, Spitaleri, Andrea, Supply, Philip, Surve, Utkarsha, Tahseen, Sabira, Thuong, Nguyen Thuy Thuong, Thwaites, Guy, Todt, Katharina, Trovato, Alberto, Utpatel, Christian, Van Rie, Annelies, Vijay, Srinivasan, Walker, Timothy M, Walker, Sarah A, Warren, Robin, Werngren, Jim, Wijkander, Maria, Wilkinson, Robert J, Wintringer, Penelope, Yu, Xin Xiao, Zhao, Yanlin, Zhu, Baoli

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GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes von Wilson, Daniel J

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Corrigendum: Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis von Fowler, Philip W, Gibertoni Cruz, Ana Luíza, Hoosdally, Sarah J, Jarrett, Lisa, Borroni, Emanuele, Chiacchiaretta, Matteo, Rathod, Priti, Lehmann, Sarah, Molodtsov, Nikolay, Grazian, Clara, Walker, Timothy M, Robinson, Esther, Hoffmann, Harald, Peto, Timothy E A, Cirillo, Daniela Maria, Smith, Grace E, Crook, Derrick W

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Experiences from 4 Years of Organization of an External Quality Assessment for Mycobacterium tuberculosis Whole-Genome Sequencing in the European Union/European Economic Area von Anthony, R M, Tagliani, E, Nikolayevskyy, V, de Zwaan, R, Mulder, A, Kamst, M, Ködmön, C, van der Werf, M J, Cirillo, D, van Soolingen, D

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A Quantitative Evaluation of MIRU-VNTR Typing Against Whole-Genome Sequencing for Identifying Mycobacterium tuberculosis Transmission: A Prospective Observational Cohort Study von Wyllie, David H, Davidson, Jennifer A, Grace Smith, E, Rathod, Priti, Crook, Derrick W, Peto, Tim EA, Robinson, Esther, Walker, Tim, Campbell, Colin

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