Interchromosomal interactions: A genomic love story of kissing chromosomes von Maass, Philipp G, Barutcu, A Rasim, Rinn, John L

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Evaluation of Replicate Number and Sequencing Depth in Toxicology Dose-Response RNA-seq von Rasim Barutcu, A.

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Transcriptomic re-analyses of human hepatocyte spheroids treated with PFAS reveals chain length and dose-dependent modes of action von Barutcu, A. Rasim, Black, Michael B., Andersen, Melvin E.

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A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus von Barutcu, A. Rasim, Maass, Philipp G., Lewandowski, Jordan P., Weiner, Catherine L., Rinn, John L.

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Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C von Maass, Philipp G., Barutcu, A. Rasim, Weiner, Catherine L., Rinn, John L.

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Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells von Barutcu, A Rasim, Lajoie, Bryan R, McCord, Rachel P, Tye, Coralee E, Hong, Deli, Messier, Terri L, Browne, Gillian, van Wijnen, Andre J, Lian, Jane B, Stein, Janet L, Dekker, Job, Imbalzano, Anthony N, Stein, Gary S

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Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging (SNP-CLING) von Maass, Philipp G., Barutcu, A. Rasim, Shechner, David M., Weiner, Catherine L., Melé, Marta, Rinn, John L.

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In Vivo Characterization of Linc-p21 Reveals Functional cis-Regulatory DNA Elements von Groff, Abigail F., Sanchez-Gomez, Diana B., Soruco, Marcela M.L., Gerhardinger, Chiara, Barutcu, A. Rasim, Li, Eric, Elcavage, Lara, Plana, Olivia, Sanchez, Lluvia V., Lee, James C., Sauvageau, Martin, Rinn, John L.

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Systematic mapping of nuclear domain-associated transcripts reveals speckles and lamina as hubs of functionally distinct retained introns von Barutcu, A. Rasim, Wu, Mingkun, Braunschweig, Ulrich, Dyakov, Boris J.A., Luo, Zheng, Turner, Kyle M., Durbic, Tanja, Lin, Zhen-Yuan, Weatheritt, Robert J., Maass, Philipp G., Gingras, Anne-Claude, Blencowe, Benjamin J.

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Enhancers in the Peril lincRNA locus regulate distant but not local genes von Groff, Abigail F, Barutcu, A Rasim, Lewandowski, Jordan P, Rinn, John L

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SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells von Barutcu, A Rasim, Lajoie, Bryan R, Fritz, Andrew J, McCord, Rachel P, Nickerson, Jeffrey A, van Wijnen, Andre J, Lian, Jane B, Stein, Janet L, Dekker, Job, Stein, Gary S, Imbalzano, Anthony N

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Editorial: RNA-Mediated Epigenetic and Transcriptional Regulation von Barutcu, A Rasim, Long, Yicheng, Motamedi, Mo

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Integrating gene expression and splicing dynamics across dose-response oxidative modulators von Barutcu, A Rasim, Black, Michael B, Samuel, Raymond, Slattery, Scott, McMullen, Patrick D, Nong, Andy

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Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C von Maass, Philipp G., Barutcu, A. Rasim, Weiner, Catherine L., Rinn, John L.

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RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells von Barutcu, A. Rasim, Hong, Deli, Lajoie, Bryan R., McCord, Rachel Patton, van Wijnen, Andre J., Lian, Jane B., Stein, Janet L., Dekker, Job, Imbalzano, Anthony N., Stein, Gary S.

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Inter-chromosomal contacts demarcate genome topology along a spatial gradient von Mokhtaridoost, Milad, Chalmers, Jordan J., Soleimanpoor, Marzieh, McMurray, Brandon J., Lato, Daniella F., Nguyen, Son C., Musienko, Viktoria, Nash, Joshua O., Espeso-Gil, Sergio, Ahmed, Sameen, Delfosse, Kate, Browning, Jared W. L., Barutcu, A. Rasim, Wilson, Michael D., Liehr, Thomas, Shlien, Adam, Aref, Samin, Joyce, Eric F., Weise, Anja, Maass, Philipp G.

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C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization von Barutcu, A. Rasim, Fritz, Andrew J., Zaidi, Sayyed K., van Wijnen, André J., Lian, Jane B., Stein, Janet L., Nickerson, Jeffrey A., Imbalzano, Anthony N., Stein, Gary S.

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Mining toxicogenomic data for dose-responsive pathways: implications in advancing next-generation risk assessment von Barutcu, A. Rasim, Black, Michael B., Nong, Andy

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The connection between BRG1, CTCF and topoisomerases at TAD boundaries von Barutcu, A. Rasim, Lian, Jane B., Stein, Janet L., Stein, Gary S., Imbalzano, Anthony N.

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Chromosomes at Work: Organization of Chromosome Territories in the Interphase Nucleus von Fritz, Andrew J., Barutcu, A. Rasim, Martin-Buley, Lori, van Wijnen, André J., Zaidi, Sayyed K., Imbalzano, Anthony N., Lian, Jane B., Stein, Janet L., Stein, Gary S.

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