Single-cell barcoding and sequencing using droplet microfluidics von Zilionis, Rapolas, Nainys, Juozas, Veres, Adrian, Savova, Virginia, Zemmour, David, Klein, Allon M, Mazutis, Linas

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Single-Cell Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid Populations across Individuals and Species von Zilionis, Rapolas, Engblom, Camilla, Pfirschke, Christina, Savova, Virginia, Zemmour, David, Saatcioglu, Hatice D., Krishnan, Indira, Maroni, Giorgia, Meyerovitz, Claire V., Kerwin, Clara M., Choi, Sun, Richards, William G., De Rienzo, Assunta, Tenen, Daniel G., Bueno, Raphael, Levantini, Elena, Pittet, Mikael J., Klein, Allon M.

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Population snapshots predict early haematopoietic and erythroid hierarchies von Tusi, Betsabeh Khoramian, Wolock, Samuel L., Weinreb, Caleb, Hwang, Yung, Hidalgo, Daniel, Zilionis, Rapolas, Waisman, Ari, Huh, Jun R., Klein, Allon M., Socolovsky, Merav

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A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage von Sharir, Amnon, Marangoni, Pauline, Zilionis, Rapolas, Wan, Mian, Wald, Tomas, Hu, Jimmy K., Kawaguchi, Kyogo, Castillo-Azofeifa, David, Epstein, Leo, Harrington, Kyle, Pagella, Pierfrancesco, Mitsiadis, Thimios, Siebel, Christian W., Klein, Allon M., Klein, Ophir D.

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Quantitative Clonal Analysis and Single-Cell Transcriptomics Reveal Division Kinetics, Hierarchy, and Fate of Oral Epithelial Progenitor Cells von Jones, Kyle B., Furukawa, Sachiko, Marangoni, Pauline, Ma, Hongfang, Pinkard, Henry, D’Urso, Rebecca, Zilionis, Rapolas, Klein, Allon M., Klein, Ophir D.

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End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data von Derr, Alan, Yang, Chaoxing, Zilionis, Rapolas, Sergushichev, Alexey, Blodgett, David M, Redick, Sambra, Bortell, Rita, Luban, Jeremy, Harlan, David M, Kadener, Sebastian, Greiner, Dale L, Klein, Allon, Artyomov, Maxim N, Garber, Manuel

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A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte von Plasschaert, Lindsey W., Žilionis, Rapolas, Choo-Wing, Rayman, Savova, Virginia, Knehr, Judith, Roma, Guglielmo, Klein, Allon M., Jaffe, Aron B.

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Tumor-Promoting Ly-6G+ SiglecFhigh Cells Are Mature and Long-Lived Neutrophils von Pfirschke, Christina, Engblom, Camilla, Gungabeesoon, Jeremy, Lin, Yunkang, Rickelt, Steffen, Zilionis, Rapolas, Messemaker, Marius, Siwicki, Marie, Gerhard, Genevieve M., Kohl, Anna, Meylan, Etienne, Weissleder, Ralph, Klein, Allon M., Pittet, Mikael J.

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Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR von Zemmour, David, Zilionis, Rapolas, Kiner, Evgeny, Klein, Allon M., Mathis, Diane, Benoist, Christophe

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Osteoblasts remotely supply lung tumors with cancer-promoting SiglecFhigh neutrophils von Engblom, Camilla, Pfirschke, Christina, Zilionis, Rapolas, Da Silva Martins, Janaina, Bos, Stijn A., Courties, Gabriel, Rickelt, Steffen, Severe, Nicolas, Baryawno, Ninib, Faget, Julien, Savova, Virginia, Zemmour, David, Kline, Jaclyn, Siwicki, Marie, Garris, Christopher, Pucci, Ferdinando, Liao, Hsin-Wei, Lin, Yi-Jang, Newton, Andita, Yaghi, Omar K., Iwamoto, Yoshiko, Tricot, Benoit, Wojtkiewicz, Gregory R., Nahrendorf, Matthias, Cortez-Retamozo, Virna, Meylan, Etienne, Hynes, Richard O., Demay, Marie, Klein, Allon, Bredella, Miriam A., Scadden, David T., Weissleder, Ralph, Pittet, Mikael J.

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Identification of a targetable KRAS-mutant epithelial population in non-small cell lung cancer von Maroni, Giorgia, Bassal, Mahmoud A., Krishnan, Indira, Fhu, Chee Wai, Savova, Virginia, Zilionis, Rapolas, Maymi, Valerie A., Pandell, Nicole, Csizmadia, Eva, Zhang, Junyan, Storti, Barbara, Castaño, Julio, Panella, Riccardo, Li, Jia, Gustafson, Corinne E., Fox, Sam, Levy, Rachel D., Meyerovitz, Claire V., Tramontozzi, Peter J., Vermilya, Kimberly, De Rienzo, Assunta, Crucitta, Stefania, Bassères, Daniela S., Weetall, Marla, Branstrom, Art, Giorgetti, Alessandra, Ciampi, Raffaele, Del Re, Marzia, Danesi, Romano, Bizzarri, Ranieri, Yang, Henry, Kocher, Olivier, Klein, Allon M., Welner, Robert S., Bueno, Raphael, Magli, Maria Cristina, Clohessy, John G., Ali, Azhar, Tenen, Daniel G., Levantini, Elena

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Increasing Fluid Viscosity Ensures Consistent Single-Cell Encapsulation von Pranauskaite, Emile, Milkus, Valdemaras, Ritmejeris, Justas, Zilionis, Rapolas, Mazutis, Linas

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Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex von Hrvatin, Sinisa, Hochbaum, Daniel R., Nagy, M. Aurel, Cicconet, Marcelo, Robertson, Keiramarie, Cheadle, Lucas, Zilionis, Rapolas, Ratner, Alex, Borges-Monroy, Rebeca, Klein, Allon M., Sabatini, Bernardo L., Greenberg, Michael E.

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Activation of NLRP3 Inflammasome by Virus-Like Particles of Human Polyomaviruses in Macrophages von Lučiūnaitė, Asta, Dalgėdienė, Indrė, Žilionis, Rapolas, Mašalaitė, Kristina, Norkienė, Milda, Šinkūnas, Andrius, Gedvilaitė, Alma, Kučinskaitė-Kodzė, Indrė, Žvirblienė, Aurelija

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DNA Nanoparticles for Improved Protein Synthesis In Vitro von Galinis, Robertas, Stonyte, Greta, Kiseliovas, Vaidotas, Zilionis, Rapolas, Studer, Sabine, Hilvert, Donald, Janulaitis, Arvydas, Mazutis, Linas

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Publisher Correction: Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR von Zemmour, David, Zilionis, Rapolas, Kiner, Evgeny, Klein, Allon M, Mathis, Diane, Benoist, Christophe

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A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage von Sharir, Amnon, Marangoni, Pauline, Zilionis, Rapolas, Wan, Mian, Wald, Tomas, Hu, Jimmy K, Kawaguchi, Kyogo, Castillo-Azofeifa, David, Epstein, Leo, Harrington, Kyle, Pagella, Pierfrancesco, Mitsiadis, Thimios, Siebel, Christian W, Klein, Allon M, Klein, Ophir D

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Population Snapshots Predict Early Hematopoietic and Erythroid Hierarchies von Tusi, Betsabeh Khoramian, Wolock, Samuel L., Weinreb, Caleb, Hwang, Yung, Hidalgo, Daniel, Zilionis, Rapolas, Waisman, Ari, Huh, Jun R., Klein, Allon M., Socolovsky, Merav

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Macrophage-Targeted Therapy Unlocks Antitumoral Cross-talk between IFNγ-Secreting Lymphocytes and IL12-Producing Dendritic Cells von Pfirschke, Christina, Zilionis, Rapolas, Engblom, Camilla, Messemaker, Marius, Zou, Angela E, Rickelt, Steffen, Gort-Freitas, Nicolas A, Lin, Yunkang, Bill, Ruben, Siwicki, Marie, Gungabeesoon, Jeremy, Sprachman, Melissa M, Marquard, Angela N, Rodell, Christopher B, Cuccarese, Michael F, Quintana, Jeremy, Ahmed, Maaz S, Kohler, Rainer H, Savova, Virginia, Weissleder, Ralph, Klein, Allon M, Pittet, Mikael J

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Abstract 5864: Novel anti-BMI-1 therapy in non-small cell lung cancer von Krishnan, Indira, Maroni, Giorgia, Clohessy, Sean, Savova, Virginia, Bassal, Mahmoud, Zilionis, Rapolas, Csizmadia, Eva, Kerwin, Clara M., Choi, Sun, Meyerovitz, Claire V., Pandell, Nicole, Fhu, Chee W., Zhang, Junyan, Basseres, Daniela S., Magli, Cristina M., Goggi, Julian, Welner, Robert S., Klein, Allon M., Weetall, Marla, Branstrom, Art, Bueno, Raphael, Ali, Azhar, Tenen, Daniel G., Levantini, Elena

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