Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network von Ideker, Trey, Thorsson, Vesteinn, Ranish, Jeffrey A., Christmas, Rowan, Buhler, Jeremy, Eng, Jimmy K., Bumgarner, Roger, Goodlett, David R., Aebersold, Ruedi, Hood, Leroy

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A transcription reinitiation intermediate that is stabilized by activator von Yudkovsky, Natalya, Ranish, Jeffrey A., Hahn, Steven

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Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB von Ranish, J A, Yudkovsky, N, Hahn, S

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The yeast general transcription factor TFIIA is composed of two polypeptide subunits von Ranish, J.A. (Fred Hutchinson Cancer Research Center, Seattle, WA), Hahn, S

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Analysis of the yeast transcription factor TFIIA: distinct functional regions and a polymerase II-specific role in basal and activated transcription von Kang, John J., Auble, David T., Ranish, Jeffrey A., Hahn, Steven

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Isolation of two genes that encode subunits of the yeast transcription factor IIA von Ranish, J.A. (Fred Hutchinson Cancer Research Center, Seattle, WA), Lane, W.S, Hahn, S

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Yeast Nuclear Extract Contains Two Major Forms of RNA Polymerase II Mediator Complexes von Liu, Ying, Ranish, Jeffrey A., Aebersold, Ruedi, Hahn, Steven

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Transcription: basal factors and activation von Ranish, Jeffrey A, Hahn, Steven

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Quantitative proteome analysis by solid-phase isotope tagging and mass spectrometry von Zhou, Huilin, Ranish, Jeffrey A., Watts, Julian D., Aebersold, Ruedi

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Automated Statistical Analysis of Protein Abundance Ratios from Data Generated by Stable-Isotope Dilution and Tandem Mass Spectrometry von Li, Xiao-jun, Zhang, Hui, Ranish, Jeffrey A, Aebersold, Ruedi

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A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A von Giglia-Mari, Giuseppina, Coin, Frederic, Ranish, Jeffrey A, Hoogstraten, Deborah, Theil, Arjan, Wijgers, Nils, Jaspers, Nicolaas G J, Raams, Anja, Argentini, Manuela, van der Spek, P J, Botta, Elena, Stefanini, Miria, Egly, Jean-Marc, Aebersold, Ruedi, Hoeijmakers, Jan H J, Vermeulen, Wim

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The study of macromolecular complexes by quantitative proteomics von Ranish, Jeffrey A., Yi, Eugene C., Leslie, Deena M., Purvine, Samuel O., Goodlett, David R., Eng, Jimmy, Aebersold, Ruedi

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Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics von Brand, Marjorie, Ranish, Jeffrey A, Kummer, Nicolas T, Hamilton, Joan, Igarashi, Kazuhiko, Francastel, Claire, Chi, Tian H, Crabtree, Gerald R, Aebersold, Ruedi, Groudine, Mark

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Identification of TFB5, a new component of general transcription and DNA repair factor IIH von Ranish, Jeffrey A, Hahn, Steven, Lu, Yu, Yi, Eugene C, Li, Xiao-jun, Eng, Jimmy, Aebersold, Ruedi

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Positive and negative functions of the SAGA complex mediated through interaction of Spt8 with TBP and the N-terminal domain of TFIIA von Warfield, Linda, Ranish, Jeffrey A, Hahn, Steven

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Quantitative Proteomic Identification of Six4 as the Trex-Binding Factor in the Muscle Creatine Kinase Enhancer von Himeda, Charis L., Ranish, Jeffrey A., Angello, John C., Maire, Pascal, Aebersold, Ruedi, Hauschka, Stephen D.

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RNA Polymerase II (Pol II)-TFIIF and Pol II-Mediator Complexes: the Major Stable Pol II Complexes and Their Activity in Transcription Initiation and Reinitiation von Rani, P. Geetha, Ranish, Jeffrey A., Hahn, Steven

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Abundance Ratio-Dependent Proteomic Analysis by Mass Spectrometry von Griffin, Timothy J., Lock, Chris M., Li, Xiao-jun, Patel, Alpesh, Chervetsova, Iryna, Lee, Hookeun, Wright, Michael E., Ranish, Jeffrey A., Chen, Sharon S., Aebersold, Ruedi

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Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry von Desiere, Frank, Deutsch, Eric W, Nesvizhskii, Alexey I, Mallick, Parag, King, Nichole L, Eng, Jimmy K, Aderem, Alan, Boyle, Rose, Brunner, Erich, Donohoe, Samuel, Fausto, Nelson, Hafen, Ernst, Hood, Lee, Katze, Michael G, Kennedy, Kathleen A, Kregenow, Floyd, Lee, Hookeun, Lin, Biaoyang, Martin, Dan, Ranish, Jeffrey A, Rawlings, David J, Samelson, Lawrence E, Shiio, Yuzuru, Watts, Julian D, Wollscheid, Bernd, Wright, Michael E, Yan, Wei, Yang, Lihong, Yi, Eugene C, Zhang, Hui, Aebersold, Ruedi

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Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry von Desiere, F, Deutsch, E W, Nesvizhskii, A I, Mallick, P, King, N L, Eng, J K, Aderem, A, Boyle, R, Brunner, E, Donohoe, S, Fausto, N, Hafen, E, Hood, L, Katze, M G, Kennedy, K A, Kregenow, F, Lee, H, Lin, B, Martin, D, Ranish, J A, Rawlings, D J, Samelson, L E, Shiio, Y, Watts, J D, Wollscheid, B, Wright, M E, Yan, W, Yang, L, Yi, E C, Zhang, H, Aebersold, R

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