Ten quick tips for biomarker discovery and validation analyses using machine learning von Diaz-Uriarte, Ramon, Gómez de Lope, Elisa, Giugno, Rosalba, Fröhlich, Holger, Nazarov, Petr V, Nepomuceno-Chamorro, Isabel A, Rauschenberger, Armin, Glaab, Enrico

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Every which way? On predicting tumor evolution using cancer progression models von Diaz-Uriarte, Ramon, Vasallo, Claudia

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Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next? von Diaz-Colunga, Juan, Diaz-Uriarte, Ramon

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GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest von Diaz-Uriarte, Ramón

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Estimating the predictability of cancer evolution von Hosseini, Sayed-Rzgar, Diaz-Uriarte, Ramon, Markowetz, Florian, Beerenwinkel, Niko

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Functionally opposing effects of testosterone on two different types of parasite: implications for the immunocompetence handicap hypothesis von Fuxjager, Matthew J, Foufopoulos, Johannes, Diaz-Uriarte, Ramon, Marler, Catherine A

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Mecp2-null mice provide new neuronal targets for Rett syndrome von Urdinguio, Rocio G, Lopez-Serra, Lidia, Lopez-Nieva, Pilar, Alaminos, Miguel, Diaz-Uriarte, Ramon, Fernandez, Agustin F, Esteller, Manel

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Identification of MST1/STK4 and SULF1 Proteins as Autoantibody Targets for the Diagnosis of Colorectal Cancer by Using Phage Microarrays von Babel, Ingrid, Barderas, Rodrigo, Diaz-Uriarte, Ramón, Moreno, Víctor, Suarez, Adolfo, Fernandez-Aceñero, María Jesús, Salazar, Ramón, Capellá, Gabriel, Casal, J. Ignacio

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SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data von Diaz-Uriarte, Ramon

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FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes von Al-Shahrour, Fátima, Díaz-Uriarte, Ramón, Dopazo, Joaquín

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miRNA expression in diffuse large B-cell lymphoma treated with chemoimmunotherapy von Montes-Moreno, Santiago, Martinez, Nerea, Sanchez-Espiridión, Beatriz, Díaz Uriarte, Ramon, Rodriguez, Maria Elena, Saez, Anabel, Montalbán, Carlos, Gomez, Gonzalo, Pisano, David G., García, Juan Fernando, Conde, Eulogio, Gonzalez-Barca, Eva, Lopez, Andres, Mollejo, Manuela, Grande, Carlos, Martinez, Miguel Angel, Dunphy, Cherie, Hsi, Eric D., Rocque, Gabrielle B., Chang, Julie, Go, Ronald S., Visco, Carlo, Xu-Monette, Zijun, Young, Ken H., Piris, Miguel A.

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Gene selection and classification of microarray data using random forest von Diaz-Uriarte, Ramon, Alvarez de Andres, Sara

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An epistatic interaction between the PAX8 and STK17B genes in papillary thyroid cancer susceptibility von Landa, Iñigo, Boullosa, Cesar, Inglada-Pérez, Lucía, Sastre-Perona, Ana, Pastor, Susana, Velázquez, Antonia, Mancikova, Veronika, Ruiz-Llorente, Sergio, Schiavi, Francesca, Marcos, Ricard, Malats, Nuria, Opocher, Giuseppe, Diaz-Uriarte, Ramon, Santisteban, Pilar, Valencia, Alfonso, Robledo, Mercedes

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Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously von Rueda, Oscar M, Diaz-Uriarte, Ramon

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Cancer progression models and fitness landscapes: a many-to-many relationship von Diaz-Uriarte, Ramon

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A Predictor Based on the Somatic Genomic Changes of the BRCA1/BRCA2 Breast Cancer Tumors Identifies the Non-BRCA1/BRCA2 Tumors with BRCA1 Promoter Hypermethylation von Alvarez, Sara, Diaz-Uriarte, Ramon, Osorio, Ana, Barroso, Alicia, Melchor, Lorenzo, Paz, Maria Fe, Honrado, Emiliano, Rodríguez, Raquel, Urioste, Miguel, Valle, Laura, Díez, Orland, Cigudosa, Juan Cruz, Dopazo, Joaquin, Esteller, Manel, Benitez, Javier

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OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations von Diaz-Uriarte, Ramon

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Simulating Evolution in Asexual Populations with Epistasis von Diaz-Uriarte, Ramon

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A hypercubic Mk model framework for capturing reversibility in disease, cancer, and evolutionary accumulation modelling von Johnston, Iain G, Diaz-Uriarte, Ramon

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CNVassoc: Association analysis of CNV data using R von Subirana, Isaac, Diaz-Uriarte, Ramon, Lucas, Gavin, Gonzalez, Juan R

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