Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps von Jansen, Camden, Ramirez, Ricardo N, El-Ali, Nicole C, Gomez-Cabrero, David, Tegner, Jesper, Merkenschlager, Matthias, Conesa, Ana, Mortazavi, Ali

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The cis-Regulatory Atlas of the Mouse Immune System von Yoshida, Hideyuki, Lareau, Caleb A., Ramirez, Ricardo N., Rose, Samuel A., Maier, Barbara, Wroblewska, Aleksandra, Desland, Fiona, Chudnovskiy, Aleksey, Mortha, Arthur, Dominguez, Claudia, Tellier, Julie, Kim, Edy, Dwyer, Dan, Shinton, Susan, Nabekura, Tsukasa, Qi, YiLin, Yu, Bingfei, Robinette, Michelle, Kim, Ki-Wook, Wagers, Amy, Rhoads, Andrew, Nutt, Stephen L., Brown, Brian D., Mostafavi, Sara, Buenrostro, Jason D., Benoist, Christophe

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iPSC-Derived Human Microglia-like Cells to Study Neurological Diseases von Abud, Edsel M., Ramirez, Ricardo N., Martinez, Eric S., Healy, Luke M., Nguyen, Cecilia H.H., Newman, Sean A., Yeromin, Andriy V., Scarfone, Vanessa M., Marsh, Samuel E., Fimbres, Cristhian, Caraway, Chad A., Fote, Gianna M., Madany, Abdullah M., Agrawal, Anshu, Kayed, Rakez, Gylys, Karen H., Cahalan, Michael D., Cummings, Brian J., Antel, Jack P., Mortazavi, Ali, Carson, Monica J., Poon, Wayne W., Blurton-Jones, Mathew

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Regeneration of fat cells from myofibroblasts during wound healing von Plikus, Maksim V., Guerrero-Juarez, Christian F., Ito, Mayumi, Li, Yun Rose, Dedhia, Priya H., Zheng, Ying, Shao, Mengle, Gay, Denise L., Ramos, Raul, Hsi, Tsai-Ching, Oh, Ji Won, Wang, Xiaojie, Ramirez, Amanda, Konopelski, Sara E., Elzein, Arijh, Wang, Anne, Supapannachart, Rarinthip June, Lee, Hye-Lim, Lim, Chae Ho, Nace, Arben, Guo, Amy, Treffeisen, Elsa, Andl, Thomas, Ramirez, Ricardo N., Murad, Rabi, Offermanns, Stefan, Metzger, Daniel, Chambon, Pierre, Widgerow, Alan D., Tuan, Tai-Lan, Mortazavi, Ali, Gupta, Rana K., Hamilton, Bruce A., Millar, Sarah E., Seale, Patrick, Pear, Warren S., Lazar, Mitchell A., Cotsarelis, George

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Deep learning of immune cell differentiation von Maslova, Alexandra, Ramirez, Ricardo N., Ma, Ke, Schmutz, Hugo, Wang, Chendi, Fox, Curtis, Ng, Bernard, Benoist, Christophe, Mostafavi, Sara

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Slug regulates the Dll4-Notch-VEGFR2 axis to control endothelial cell activation and angiogenesis von Hultgren, Nan W., Fang, Jennifer S., Ziegler, Mary E., Ramirez, Ricardo N., Phan, Duc T. T., Hatch, Michaela M. S., Welch-Reardon, Katrina M., Paniagua, Antonio E., Kim, Lin S., Shon, Nathan N., Williams, David S., Mortazavi, Ali, Hughes, Christopher C. W.

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Prostaglandin E2 Leads to the Acquisition of DNMT3A-Dependent Tolerogenic Functions in Human Myeloid-Derived Suppressor Cells von Rodríguez-Ubreva, Javier, Català-Moll, Francesc, Obermajer, Nataša, Álvarez-Errico, Damiana, Ramirez, Ricardo N., Company, Carlos, Vento-Tormo, Roser, Moreno-Bueno, Gema, Edwards, Robert P., Mortazavi, Ali, Kalinski, Pawel, Ballestar, Esteban

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Mutations from patients with IPEX ported to mice reveal different patterns of FoxP3 and Treg dysfunction von Leon, Juliette, Chowdhary, Kaitavjeet, Zhang, Wenxiang, Ramirez, Ricardo N., André, Isabelle, Hur, Sun, Mathis, Diane, Benoist, Christophe

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Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on superenhancers von Bansal, Kushagra, Michelson, Daniel A., Ramirez, Ricardo N., Viny, Aaron D., Levine, Ross L., Benoist, Christophe, Mathis, Diane

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Dynamic Gene Regulatory Networks of Human Myeloid Differentiation von Ramirez, Ricardo N., El-Ali, Nicole C., Mager, Mikayla Anne, Wyman, Dana, Conesa, Ana, Mortazavi, Ali

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Interferon-α-producing plasmacytoid dendritic cells drive the loss of adipose tissue regulatory T cells during obesity von Li, Chaoran, Wang, Gang, Sivasami, Pulavendran, Ramirez, Ricardo N., Zhang, Yanbo, Benoist, Christophe, Mathis, Diane

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Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation von Ferreirós-Vidal, Isabel, Carroll, Thomas, Zhang, Tianyi, Lagani, Vincenzo, Ramirez, Ricardo N, Ing-Simmons, Elizabeth, Gómez-Valadés, Alicia G, Cooper, Lee, Liang, Ziwei, Papoutsoglou, Georgios, Dharmalingam, Gopuraja, Guo, Ya, Tarazona, Sonia, Fernandes, Sunjay J, Noori, Peri, Silberberg, Gilad, Fisher, Amanda G, Tsamardinos, Ioannis, Mortazavi, Ali, Lenhard, Boris, Conesa, Ana, Tegner, Jesper, Merkenschlager, Matthias, Gomez-Cabrero, David

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Maternal gut bacteria drive intestinal inflammation in offspring with neurodevelopmental disorders by altering the chromatin landscape of CD4+ T cells von Kim, Eunha, Paik, Donggi, Ramirez, Ricardo N., Biggs, Delaney G., Park, Youngjun, Kwon, Ho-Keun, Choi, Gloria B., Huh, Jun R.

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The gut microbiota promotes distal tissue regeneration via RORγ+ regulatory T cell emissaries von Hanna, Bola S., Wang, Gang, Galván-Peña, Silvia, Mann, Alexander O., Ramirez, Ricardo N., Muñoz-Rojas, Andrés R., Smith, Kathleen, Wan, Min, Benoist, Christophe, Mathis, Diane

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FOXP3 recognizes microsatellites and bridges DNA through multimerization von Zhang, Wenxiang, Leng, Fangwei, Wang, Xi, Ramirez, Ricardo N., Park, Jinseok, Benoist, Christophe, Hur, Sun

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The transcription factor FoxP3 can fold into two dimerization states with divergent implications for regulatory T cell function and immune homeostasis von Leng, Fangwei, Zhang, Wenxiang, Ramirez, Ricardo N., Leon, Juliette, Zhong, Yi, Hou, Lifei, Yuki, Koichi, van der Veeken, Joris, Rudensky, Alexander Y., Benoist, Christophe, Hur, Sun

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Identification of NK Cell Subpopulations That Differentiate HIV-Infected Subject Cohorts with Diverse Levels of Virus Control von Pohlmeyer, Christopher W, Gonzalez, Veronica D, Irrinki, Alivelu, Ramirez, Ricardo N, Li, Li, Mulato, Andrew, Murry, Jeffrey P, Arvey, Aaron, Hoh, Rebecca, Deeks, Steven G, Kukolj, George, Cihlar, Tomas, Pflanz, Stefan, Nolan, Garry P, Min-Oo, Gundula

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TCF7L1 suppresses primitive streak gene expression to support human embryonic stem cell pluripotency von Sierra, Robert A, Hoverter, Nathan P, Ramirez, Ricardo N, Vuong, Linh M, Mortazavi, Ali, Merrill, Bradley J, Waterman, Marian L, Donovan, Peter J

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STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse von Gomez-Cabrero, David, Tarazona, Sonia, Ferreirós-Vidal, Isabel, Ramirez, Ricardo N., Company, Carlos, Schmidt, Andreas, Reijmers, Theo, Paul, Veronica von Saint, Marabita, Francesco, Rodríguez-Ubreva, Javier, Garcia-Gomez, Antonio, Carroll, Thomas, Cooper, Lee, Liang, Ziwei, Dharmalingam, Gopuraja, van der Kloet, Frans, Harms, Amy C., Balzano-Nogueira, Leandro, Lagani, Vincenzo, Tsamardinos, Ioannis, Lappe, Michael, Maier, Dieter, Westerhuis, Johan A., Hankemeier, Thomas, Imhof, Axel, Ballestar, Esteban, Mortazavi, Ali, Merkenschlager, Matthias, Tegner, Jesper, Conesa, Ana

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Late-Breaking Basic Science Abstracts From the American Heart Association's Scientific Sessions 2023

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