Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease von Gonorazky, Hernan D., Naumenko, Sergey, Ramani, Arun K., Nelakuditi, Viswateja, Mashouri, Pouria, Wang, Peiqui, Kao, Dennis, Ohri, Krish, Viththiyapaskaran, Senthuri, Tarnopolsky, Mark A., Mathews, Katherine D., Moore, Steven A., Osorio, Andres N., Villanova, David, Kemaladewi, Dwi U., Cohn, Ronald D., Brudno, Michael, Dowling, James J.

Volltext

Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation von Ip, Joanna Y, Schmidt, Dominic, Pan, Qun, Ramani, Arun K, Fraser, Andrew G, Odom, Duncan T, Blencowe, Benjamin J

Volltext

Comparative RNAi screens in C. elegans and C. briggsae reveal the impact of developmental system drift on gene function von Verster, Adrian J, Ramani, Arun K, McKay, Sheldon J, Fraser, Andrew G

Volltext

A Pair of RNA-Binding Proteins Controls Networks of Splicing Events Contributing to Specialization of Neural Cell Types von Norris, Adam D., Gao, Shangbang, Norris, Megan L., Ray, Debashish, Ramani, Arun K., Fraser, Andrew G., Morris, Quaid, Hughes, Timothy R., Zhen, Mei, Calarco, John A.

Volltext

Control of Long-Term Synaptic Potentiation and Learning by Alternative Splicing of the NMDA Receptor Subunit GluN1 von Sengar, Ameet S., Li, Hongbin, Zhang, Wenbo, Leung, Celeste, Ramani, Arun K., Saw, Ner Mu, Wang, Yongqian, Tu, YuShan, Ross, P. Joel, Scherer, Stephen W., Ellis, James, Brudno, Michael, Jia, Zhengping, Salter, Michael W.

Volltext

Genome-wide analysis of alternative splicing in Caenorhabditis elegans von Ramani, Arun K, Calarco, John A, Pan, Qun, Mavandadi, Sepand, Wang, Ying, Nelson, Andrew C, Lee, Leo J, Morris, Quaid, Blencowe, Benjamin J, Zhen, Mei, Fraser, Andrew G

Volltext

The Majority of Animal Genes Are Required for Wild-Type Fitness von Ramani, Arun K., Chuluunbaatar, Tungalag, Verster, Adrian J., Na, Hong, Vu, Victoria, Pelte, Nadège, Wannissorn, Nattha, Jiao, Alan, Fraser, Andrew G.

Volltext

Protein interaction networks from yeast to human von Bork, Peer, Jensen, Lars J, von Mering, Christian, Ramani, Arun K, Lee, Insuk, Marcotte, Edward M

Volltext

High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans von Ramani, Arun K, Nelson, Andrew C, Kapranov, Philipp, Bell, Ian, Gingeras, Thomas R, Fraser, Andrew G

Volltext

Evaluation of single-cell RNA-seq clustering algorithms on cancer tumor datasets von Mahalanabis, Alaina, Turinsky, Andrei L., Husić, Mia, Christensen, Erik, Luo, Ping, Naidas, Alaine, Brudno, Michael, Pugh, Trevor, Ramani, Arun K., Shooshtari, Parisa

Volltext

C. elegans SUP-46, an HNRNPM family RNA-binding protein that prevents paternally-mediated epigenetic sterility von Johnston, Wendy L, Krizus, Aldis, Ramani, Arun K, Dunham, Wade, Youn, Ji Young, Fraser, Andrew G, Gingras, Anne-Claude, Dennis, James W

Volltext

A map of human protein interactions derived from co‐expression of human mRNAs and their orthologs von Ramani, Arun K, Li, Zhihua, Hart, G Traver, Carlson, Mark W, Boutz, Daniel R, Marcotte, Edward M

Volltext

MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidates von Apostolides, Michael, Jiang, Yue, Husić, Mia, Siddaway, Robert, Hawkins, Cynthia, Turinsky, Andrei L, Brudno, Michael, Ramani, Arun K

Volltext

Prevalence and Clinical Features of Inflammatory Bowel Diseases Associated With Monogenic Variants, Identified by Whole-Exome Sequencing in 1000 Children at a Single Center von Crowley, Eileen, Warner, Neil, Pan, Jie, Khalouei, Sam, Elkadri, Abdul, Fiedler, Karoline, Foong, Justin, Turinsky, Andrei L., Bronte-Tinkew, Dana, Zhang, Shiqi, Hu, Jamie, Tian, David, Li, Dalin, Horowitz, Julie, Siddiqui, Iram, Upton, Julia, Roifman, Chaim M., Church, Peter C., Wall, Donna A., Ramani, Arun K., Kotlarz, Daniel, Klein, Christoph, Uhlig, Holm, Snapper, Scott B., Gonzaga-Jauregui, Claudia, Paterson, Andrew D., McGovern, Dermot P.B., Brudno, Michael, Walters, Thomas D., Griffiths, Anne M., Muise, Aleixo M.

Volltext

How complete are current yeast and human protein-interaction networks? von Hart, G Traver, Ramani, Arun K, Marcotte, Edward M

Volltext

A Machine Learning Approach to Identifying Causal Monogenic Variants in Inflammatory Bowel Disease von Mulder, Daniel J., Khalouei, Sam, Li, Michael, Warner, Neil, Gonzaga-Jauregui, Claudia, Benchimol, Eric I., Church, Peter C., Walters, Thomas D., Ramani, Arun K., Griffiths, Anne M., Ricciuto, Amanda, Muise, Aleixo M.

Volltext

Conserved transcriptional programming across sex and species after peripheral nerve injury predicts treatments for neuropathic pain von Ghazisaeidi, Shahrzad, Muley, Milind M, Tu, YuShan, Finn, David P, Kolahdouzan, Mahshad, Pitcher, Graham M, Kim, Doyeon, Sengar, Ameet S, Ramani, Arun K, Brudno, Michael, Salter, Michael W

Volltext

Clinical Implementation of MetaFusion for Accurate Cancer-Driving Fusion Detection from RNA Sequencing von Apostolides, Michael, Li, Michael, Arnoldo, Anthony, Ku, Michelle, Husić, Mia, Ramani, Arun K, Brudno, Michael, Turinsky, Andrei, Hawkins, Cynthia, Siddaway, Robert

Volltext

Identification of complex genomic rearrangements in cancers using CouGaR von Dzamba, Misko, Ramani, Arun K, Buczkowicz, Pawel, Jiang, Yue, Yu, Man, Hawkins, Cynthia, Brudno, Michael

Volltext

Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease von Gonorazky, Hernan D., Naumenko, Sergey, Ramani, Arun K., Nelakuditi, Viswateja, Mashouri, Pouria, Wang, Peiqui, Kao, Dennis, Ohri, Krish, Viththiyapaskaran, Senthuri, Tarnopolsky, Mark A., Mathews, Katherine D., Moore, Steven A., Osorio, Andres N., Villanova, David, Kemaladewi, Dwi U., Cohn, Ronald D., Brudno, Michael, Dowling, James J.

Volltext