Exploring anti-malarial potential of FDA approved drugs: an in silico approach von Ramakrishnan, Gayatri, Chandra, Nagasuma, Srinivasan, Narayanaswamy

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DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues von Kock, Kian Hong, Kimes, Patrick K., Gisselbrecht, Stephen S., Inukai, Sachi, Phanor, Sabrina K., Anderson, James T., Ramakrishnan, Gayatri, Lipper, Colin H., Song, Dongyuan, Kurland, Jesse V., Rogers, Julia M., Jeong, Raehoon, Blacklow, Stephen C., Irizarry, Rafael A., Bulyk, Martha L.

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PANDORA v2.0: Benchmarking peptide-MHC II models and software improvements von Parizi, Farzaneh M, Marzella, Dario F, Ramakrishnan, Gayatri, 't Hoen, Peter A C, Karimi-Jafari, Mohammad Hossein, Xue, Li C

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Understanding structure-guided variant effect predictions using 3D convolutional neural networks von Ramakrishnan, Gayatri, Baakman, Coos, Heijl, Stephan, Vroling, Bas, van Horck, Ragna, Hiraki, Jeffrey, Xue, Li C, Huynen, Martijn A

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Homology-Based Prediction of Potential Protein- Protein Interactions between Human Erythrocytes and Plasmodium falciparum von Ramakrishnan, Gayatri, Srinivasan, Narayanaswamy, Padmapriya, Ponnan, Natarajan, Vasant

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Repurposing Drugs Based on Evolutionary Relationships Between Targets of Approved Drugs and Proteins of Interest von Chakraborti, Sohini, Ramakrishnan, Gayatri, Srinivasan, Narayanaswamy

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Recognizing drug targets using evolutionary information: implications for repurposing FDA-approved drugs against Mycobacterium tuberculosis H37RvElectronic supplementary informatio... von Ramakrishnan, Gayatri, Chandra, Nagasuma R, Srinivasan, Narayanaswamy

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Recognizing drug targets using evolutionary information: implications for repurposing FDA-approved drugs against Mycobacterium tuberculosisH37Rv von Ramakrishnan, Gayatri, Chandra, Nagasuma R, Srinivasan, Narayanaswamy

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Recognizing drug targets using evolutionary information: implications for repurposing FDA-approved drugs against Mycobacterium tuberculosis H37Rv von Ramakrishnan, Gayatri, Chandra, Nagasuma R, Srinivasan, Narayanaswamy

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From workstations to workbenches: Towards predicting physicochemically viable protein–protein interactions across a host and a pathogen von Ramakrishnan, Gayatri, Chandra, Nagasuma R., Srinivasan, Narayanaswamy

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Expanding the PRAAS spectrum: De novo mutations of immunoproteasome subunit β-type 10 in six infants with SCID-Omenn syndrome von van der Made, Caspar I., Kersten, Simone, Chorin, Odelia, Engelhardt, Karin R., Ramakrishnan, Gayatri, Griffin, Helen, Schim van der Loeff, Ina, Venselaar, Hanka, Rothschild, Annick Raas, Segev, Meirav, Schuurs-Hoeijmakers, Janneke H.M., Mantere, Tuomo, Essers, Rick, Esteki, Masoud Zamani, Avital, Amir L., Loo, Peh Sun, Simons, Annet, Pfundt, Rolph, Warris, Adilia, Seyger, Marieke M., van de Veerdonk, Frank L., Netea, Mihai G., Slatter, Mary A., Flood, Terry, Gennery, Andrew R., Simon, Amos J., Lev, Atar, Frizinsky, Shirley, Barel, Ortal, van der Burg, Mirjam, Somech, Raz, Hambleton, Sophie, Henriet, Stefanie S.V., Hoischen, Alexander

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Comparison of Leptospira interrogans and Leptospira biflexa genomes: analysis of potential leptospiral-host interactions von Mehrotra, Prachi, Ramakrishnan, Gayatri, Dhandapani, Gunasekaran, Srinivasan, Narayanaswamy, Madanan, Madathiparambil G

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Exome variant prioritization in a large cohort of hearing-impaired individuals indicates IKZF2 to be associated with non-syndromic hearing loss and guides future research of unsolv... von Velde, Hedwig M., Vaseghi-Shanjani, Maryam, Smits, Jeroen J., Ramakrishnan, Gayatri, Oostrik, Jaap, Wesdorp, Mieke, Astuti, Galuh, Yntema, Helger G., Hoefsloot, Lies, Lanting, Cris P., Huynen, Martijn A., Lehman, Anna, Turvey, Stuart E., Pennings, Ronald J. E., Kremer, Hannie

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Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria von Ramakrishnan, Gayatri, Jain, Abha, Chandra, Nagasuma, Srinivasan, Narayanaswamy

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Parallel evolution and enhanced virulence upon in vivo passage of an RNA virus in Drosophila melanogaster von Lezcano, Oscar M, Fuhrmann, Lara, Ramakrishnan, Gayatri, Beerenwinkel, Niko, Huynen, Martijn A, van Rij, Ronald P

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Comparison of Leptospira interrogans and Leptospira biflexa genomes: analysis of potential leptospiral-host interactionsElectronic supplementary information (ESI) available. See DO... von Mehrotra, Prachi, Ramakrishnan, Gayatri, Dhandapani, Gunasekaran, Srinivasan, Narayanaswamy, Madanan, Madathiparambil G

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DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning von Crocioni, Giulia, Bodor, Dani L., Baakman, Coos, Parizi, Farzaneh M., Rademaker, Daniel-T., Ramakrishnan, Gayatri, van der Burg, Sven A., Marzella, Dario F., Teixeira, João M. C., Xue, Li C.

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Stratified analyses refine association between TLR7 rare variants and severe COVID-19 von Millar, Johnny, Pereira, Alexandre C., Aravindan, Latha, Das, Sukamal, Fourman, Max Head, Golightly, Ailsa, Law, Dawn, Law, Sarah, Murphy, Sheena, Ward, Mairi, Arbane, Gill, Xavier, Kugan, Banach, Dorota, Hutton, Paula, Barclay, Lucy, Peasgood, Emily, Ezeobu, Obiageri, Da Gloria, Edna Fernandes, Kent, Alissa, Bamford, Peter, Dykes, Joseph, Hijazi, Muhammad, Thomas, Jacqueline, Fine, Christopher, Ali, Syamlan, Gibson, Sian, McNeela, Fiona, Krishnamurthy, Vinodh, Trotman, Sallyanne, Cabrelli, Louise, Butler, Aaron, Gardner, Amy, Davis, Caroline, Durie, Alison, Morgan, Aled, Purewal, Manjit, Walton, Olivia, Ward, Luke, Thomson, Nicola, Savill, Heather, Bhatia, Nikhil, Webster, Andrea, Anderson, Felicity, Harvey, Alice, Poulaka, Maria, Baxter, Nicola, Akeroyd, Louise, Hudig, Lisa, Jones, Cathy, Pritchard, Kelly, Butcher, Deborah, Rowland-Jones, Sarah, Pinnell, Jez, Hibbert, Meg, Branney, Debbie, Ma, Louise, Parmar, Chetan, Jose, Sanal, Mahenthran, Mervin, Creagh-Brown, Ben, Mayangao, Irving, Marriott, Cheryl, Hierons, Sarah, Howie, Lucy, Ramos, Lidia, Menzies, Daniel, Davies, Llinos, Coton, Zoe, Vedage, Dave, Morrison, Alan, Symon, Lesley, Kannan, Thogulava, Barron, Anthony, Mitra, Atideb, Pollard, Rachel, Stead, Rachael, Skinner, Denise, Crickmore, Vikki, Deery, Joanne, Turki, Salah, Tutton, Rebecca, Waldron, Joanne, Rekha, Patel, King, Bernadette, Tyl, David, Johnson, Laura, Little, Jeff, McParland, Chantal, George, Linsha, Lewis, Tracy, Saunderson, Paula, Thornton, Lorraine, Allibone, Suzanne, Fagan, Andrew, Thomas, Helen, Jackson, Peter, Carter, Sasha, Hall, Kathryn, Hardy, John, Rawlik, Konrad

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Homology-Based Prediction of Potential Protein–Protein Interactions between Human Erythrocytes and Plasmodium falciparum von Gayatri Ramakrishnan, Narayanaswamy Srinivasan, Ponnan Padmapriya, Vasant Natarajan

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Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: Insights into structure and function von Ramakrishnan, Gayatri, Ochoa-Montaño, Bernardo, Raghavender, Upadhyayula S, Mudgal, Richa, Joshi, Adwait G, Chandra, Nagasuma R, Sowdhamini, Ramanathan, Blundell, Tom L, Srinivasan, Narayanaswamy

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