Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures von Shatoff, Elan, Bundschuh, Ralf

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Host Double Strand Break Repair Generates HIV-1 Strains Resistant to CRISPR/Cas9 von Yoder, Kristine E., Bundschuh, Ralf

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Transcriptome analysis discloses dysregulated genes in normal appearing tumor-adjacent thyroid tissues from patients with papillary thyroid carcinoma von He, Huiling, Liyanarachchi, Sandya, Li, Wei, Comiskey, Daniel F., Yan, Pearlly, Bundschuh, Ralf, Turkoglu, Altan M., Brock, Pamela, Ringel, Matthew D., de la Chapelle, Albert

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Microsatellite Instability Occurs in a Subset of Follicular Thyroid Cancers von Genutis, Luke K., Tomsic, Jerneja, Bundschuh, Ralf A., Brock, Pamela L., Williams, Michelle D., Roychowdhury, Sameek, Reeser, Julie W., Frankel, Wendy L., Alsomali, Mohammed, Routbort, Mark J., Broaddus, Russell R., Wakely, Paul E., Phay, John E., Walker, Christopher J., de la Chapelle, Albert

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Genome-wide DNA hypermethylation opposes healing in patients with chronic wounds by impairing epithelial-mesenchymal transition von Singh, Kanhaiya, Rustagi, Yashika, Abouhashem, Ahmed S, Tabasum, Saba, Verma, Priyanka, Hernandez, Edward, Pal, Durba, Khona, Dolly K, Mohanty, Sujit K, Kumar, Manishekhar, Srivastava, Rajneesh, Guda, Poornachander R, Verma, Sumit S, Mahajan, Sanskruti, Killian, Jackson A, Walker, Logan A, Ghatak, Subhadip, Mathew-Steiner, Shomita S, Wanczyk, Kristen E, Liu, Sheng, Wan, Jun, Yan, Pearlly, Bundschuh, Ralf, Khanna, Savita, Gordillo, Gayle M, Murphy, Michael P, Roy, Sashwati, Sen, Chandan K

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Targeting OCT3 attenuates doxorubicin-induced cardiac injury von Huang, Kevin M., Thomas, Megan Zavorka, Magdy, Tarek, Eisenmann, Eric D., Uddin, Muhammad Erfan, DiGiacomo, Duncan F., Pan, Alexander, Keiser, Markus, Otter, Marcus, Xia, Sherry H., Li, Yang, Jin, Yan, Fu, Qiang, Gibson, Alice A., Bonilla, Ingrid M., Carnes, Cynthia A., Corps, Kara N., Coppola, Vincenzo, Smith, Sakima A., Addison, Daniel, Nies, Anne T., Bundschuh, Ralf, Chen, Taosheng, Lustberg, Maryam B., Wang, Joanne, Oswald, Stefan, Campbell, Moray J., Yan, Pearlly S., Baker, Sharyn D., Hu, Shuiying, Burridge, Paul W., Sparreboom, Alex

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Cooperative control of a DNA origami force sensor von Robbins, Ariel, Hildebolt, Hazen, Neuhoff, Michael, Beshay, Peter, Winter, Jessica O., Castro, Carlos E., Bundschuh, Ralf, Poirier, Michael G.

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Epigenetics Meets Genetics in Acute Myeloid Leukemia: Clinical Impact of a Novel Seven-Gene Score von MARCUCCI, Guido, YAN, Pearlly, CURFMAN, John P, WHITMAN, Susan P, EISFELD, Ann-Kathrin, MENDLER, Jason H, SCHWIND, Sebastian, BECKER, Heiko, BÄR, Constance, CARROLL, Andrew J, BAER, Maria R, WETZLER, Meir, MAHARRY, Kati, CARTER, Thomas H, POWELL, Bayard L, KOLITZ, Jonathan E, BYRD, John C, PLASS, Christoph, GARZON, Ramiro, CALIGIURI, Michael A, STONE, Richard M, VOLINIA, Stefano, BUNDSCHUH, Ralf, FRANKHOUSER, David, BLOOMFIELD, Clara D, NICOLET, Deedra, METZELER, Klaus H, KOHLSCHMIDT, Jessica, MRÓZEK, Krzysztof, WU, Yue-Zhong, BUCCI, Donna

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Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome von Chen, Cai, Bundschuh, Ralf

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DNA sequence influences hexasome orientation to regulate DNA accessibility von Brehove, Matthew, Shatoff, Elan, Donovan, Benjamin T, Jipa, Caroline M, Bundschuh, Ralf, Poirier, Michael G

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SMaSH: Sample matching using SNPs in humans von Westphal, Maximillian, Frankhouser, David, Sonzone, Carmine, Shields, Peter G, Yan, Pearlly, Bundschuh, Ralf

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Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets von Gangras, Pooja, Gallagher, Thomas L, Parthun, Michael A, Yi, Zhongxia, Patton, Robert D, Tietz, Kiel T, Deans, Natalie C, Bundschuh, Ralf, Amacher, Sharon L, Singh, Guramrit

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A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction von Moreland, Blythe S, Oman, Kenji M, Bundschuh, Ralf

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Correlation of Klebsiella pneumoniae comparative genetic analyses with virulence profiles in a murine respiratory disease model von Fodah, Ramy A, Scott, Jacob B, Tam, Hok-Hei, Yan, Pearlly, Pfeffer, Tia L, Bundschuh, Ralf, Warawa, Jonathan M

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Identification of endometrial cancer methylation features using combined methylation analysis methods von Trimarchi, Michael P, Yan, Pearlly, Groden, Joanna, Bundschuh, Ralf, Goodfellow, Paul J

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Impact of FHIT loss on the translation of cancer-associated mRNAs von Kiss, Daniel L, Baez, William, Huebner, Kay, Bundschuh, Ralf, Schoenberg, Daniel R

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Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags von Kiss, Daniel L., Oman, Kenji, Bundschuh, Ralf, Schoenberg, Daniel R.

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dsRBPBind: modeling the effect of RNA secondary structure on double-stranded RNA–protein binding von Shatoff, Elan, Bundschuh, Ralf

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A Structured Viroid RNA Serves as a Substrate for Dicer-Like Cleavage To Produce Biologically Active Small RNAs but Is Resistant to RNA-Induced Silencing Complex-Mediated Degradati... von Itaya, Asuka, Zhong, Xuehua, Bundschuh, Ralf, Qi, Yijun, Wang, Ying, Takeda, Ryuta, Harris, Ann R, Molina, Carlos, Nelson, Richard S, Ding, Biao

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CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq von Walker, Logan A, Sovic, Michael G, Chiang, Chi-Ling, Hu, Eileen, Denninger, Jiyeon K, Chen, Xi, Kirby, Elizabeth D, Byrd, John C, Muthusamy, Natarajan, Bundschuh, Ralf, Yan, Pearlly

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