A unifying model that explains the origins of human inverted copy number variants von Brewer, Bonita J, Dunham, Maitreya J, Raghuraman, M K

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The effects of manipulating levels of replication initiation factors on origin firing efficiency in yeast von Lynch, Kelsey L, Alvino, Gina M, Kwan, Elizabeth X, Brewer, Bonita J, Raghuraman, M K

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Template switching between the leading and lagging strands at replication forks generates inverted copy number variants through hairpin-capped extrachromosomal DNA von Martin, Rebecca, Espinoza, Claudia Y, Large, Christopher R L, Rosswork, Joshua, Van Bruinisse, Cole, Miller, Aaron W, Sanchez, Joseph C, Miller, Madison, Paskvan, Samantha, Alvino, Gina M, Dunham, Maitreya J, Raghuraman, M K, Brewer, Bonita J

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Defective replication initiation results in locus specific chromosome breakage and a ribosomal RNA deficiency in yeast von Sanchez, Joseph C, Kwan, Elizabeth X, Pohl, Thomas J, Amemiya, Haley M, Raghuraman, M K, Brewer, Bonita J

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A natural polymorphism in rDNA replication origins links origin activation with calorie restriction and lifespan von Kwan, Elizabeth X, Foss, Eric J, Tsuchiyama, Scott, Alvino, Gina M, Kruglyak, Leonid, Kaeberlein, Matt, Raghuraman, M K, Brewer, Bonita J, Kennedy, Brian K, Bedalov, Antonio

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Functional centromeres determine the activation time of pericentric origins of DNA replication in Saccharomyces cerevisiae von Pohl, Thomas J, Brewer, Bonita J, Raghuraman, M K

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Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification von Brewer, Bonita J, Payen, Celia, Di Rienzi, Sara C, Higgins, Megan M, Ong, Giang, Dunham, Maitreya J, Raghuraman, M K

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Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication von Brewer, Bonita J, Feng, Wenyi, Collingwood, David, Boeck, Max E, Fox, Lindsay A, Alvino, Gina M, Fangman, Walton L, Raghuraman, Mosur K

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GC-rich DNA elements enable replication origin activity in the methylotrophic yeast Pichia pastoris von Liachko, Ivan, Youngblood, Rachel A, Tsui, Kyle, Bubb, Kerry L, Queitsch, Christine, Raghuraman, M K, Nislow, Corey, Brewer, Bonita J, Dunham, Maitreya J

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Replication Dynamics of the Yeast Genome von Raghuraman, M. K., Winzeler, Elizabeth A., Collingwood, David, Hunt, Sonia, Wodicka, Lisa, Conway, Andrew, Lockhart, David J., Davis, Ronald W., Brewer, Bonita J., Fangman, Walton L.

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rDNA Copy Number Variants Are Frequent Passenger Mutations in Saccharomyces cerevisiae Deletion Collections and de Novo Transformants von Kwan, Elizabeth X, Wang, Xiaobin S, Amemiya, Haley M, Brewer, Bonita J, Raghuraman, M K

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Replication in Hydroxyurea: It's a Matter of Time von Alvino, Gina M., Collingwood, David, Murphy, John M., Delrow, Jeffrey, Brewer, Bonita J., Raghuraman, M. K.

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Origin-dependent inverted-repeat amplification: a replication-based model for generating palindromic amplicons von Brewer, Bonita J, Payen, Celia, Raghuraman, M K, Dunham, Maitreya J

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Phenotypic and Genotypic Consequences of CRISPR/Cas9 Editing of the Replication Origins in the rDNA of Saccharomyces cerevisiae von Sanchez, Joseph C, Ollodart, Anja, Large, Christopher R L, Clough, Courtnee, Alvino, Gina M, Tsuchiya, Mitsuhiro, Crane, Matthew, Kwan, Elizabeth X, Kaeberlein, Matt, Dunham, Maitreya J, Raghuraman, M K, Brewer, Bonita J

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Centromere Replication Timing Determines Different Forms of Genomic Instability in Saccharomyces cerevisiae Checkpoint Mutants During Replication Stress von Feng, Wenyi, Bachant, Jeff, Collingwood, David, Raghuraman, M.K, Brewer, Bonita J

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Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex von Hiraga, Shin-Ichiro, Alvino, Gina M, Chang, Fujung, Lian, Hui-Yong, Sridhar, Akila, Kubota, Takashi, Brewer, Bonita J, Weinreich, Michael, Raghuraman, M K, Donaldson, Anne D

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The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation von Lian, Hui-Yong, Robertson, E Douglas, Hiraga, Shin-ichiro, Alvino, Gina M, Collingwood, David, McCune, Heather J, Sridhar, Akila, Brewer, Bonita J, Raghuraman, M K, Donaldson, Anne D

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Physiological Changes and Evaluation of Saltol1 Introgressed Backcrossed Inbred Lines (BILs) for Early Seedling Stage Salinity Tolerance in Rice (Oryza sativa L.) von Beulah, P., Manasa, Y., Karthika, G., Nagaraju, P., Jaldhani, V., Gobinath, R., Ramisetty, L., Arivin, M., Raghuraman, K. K., Sakhare, A. S., HariPrasad, A. S., Babu, V. Ravindra, Satya, A. Krishna, Sudhakar, P., Sundaram, R. M., Senguttuvel, P.

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Molecular analysis of the replication program in unicellular model organisms von Raghuraman, M. K, Brewer, Bonita J

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Attachment of Polymer Films to Solid Surfaces via Thermal Activation of Self-assembled Monolayers Containing Sulphonyl Azide Group von Raghuraman, G. K, Schuh, Kerstin, Prucker, Oswald, Rühe, Jürgen

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