A bacterial cytidine deaminase toxin enables CRISPR-free mitochondrial base editing von Mok, Beverly Y., de Moraes, Marcos H., Zeng, Jun, Bosch, Dustin E., Kotrys, Anna V., Raguram, Aditya, Hsu, FoSheng, Radey, Matthew C., Peterson, S. Brook, Mootha, Vamsi K., Mougous, Joseph D., Liu, David R.

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Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs von Jorth, Peter, Staudinger, Benjamin J., Wu, Xia, Hisert, Katherine B., Hayden, Hillary, Garudathri, Jayanthi, Harding, Christopher L., Radey, Matthew C., Rezayat, Amir, Bautista, Gilbert, Berrington, William R., Goddard, Amanda F., Zheng, Chunxiang, Angermeyer, Angus, Brittnacher, Mitchell J., Kitzman, Jacob, Shendure, Jay, Fligner, Corinne L., Mittler, John, Aitken, Moira L., Manoil, Colin, Bruce, James E., Yahr, Timothy L., Singh, Pradeep K.

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Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles von Nelson, Maria T., Pope, Christopher E., Marsh, Robyn L., Wolter, Daniel J., Weiss, Eli J., Hager, Kyle R., Vo, Anh T., Brittnacher, Mitchell J., Radey, Matthew C., Hayden, Hillary S., Eng, Alexander, Miller, Samuel I., Borenstein, Elhanan, Hoffman, Lucas R.

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The Landscape of Type VI Secretion across Human Gut Microbiomes Reveals Its Role in Community Composition von Verster, Adrian J., Ross, Benjamin D., Radey, Matthew C., Bao, Yiqiao, Goodman, Andrew L., Mougous, Joseph D., Borenstein, Elhanan

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Human gut bacteria contain acquired interbacterial defence systems von Ross, Benjamin D., Verster, Adrian J., Radey, Matthew C., Schmidtke, Danica T., Pope, Christopher E., Hoffman, Lucas R., Hajjar, Adeline M., Peterson, S. Brook, Borenstein, Elhanan, Mougous, Joseph D.

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Ixodes scapularis does not harbor a stable midgut microbiome von Ross, Benjamin D., Hayes, Beth, Radey, Matthew C., Lee, Xia, Josek, Tanya, Bjork, Jenna, Neitzel, David, Paskewitz, Susan, Chou, Seemay, Mougous, Joseph D.

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A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria von Whitney, John C, Peterson, S Brook, Kim, Jungyun, Pazos, Manuel, Verster, Adrian J, Radey, Matthew C, Kulasekara, Hemantha D, Ching, Mary Q, Bullen, Nathan P, Bryant, Diane, Goo, Young Ah, Surette, Michael G, Borenstein, Elhanan, Vollmer, Waldemar, Mougous, Joseph D

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Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins von Ting, See-Yeun, Bosch, Dustin E., Mangiameli, Sarah M., Radey, Matthew C., Huang, Shuo, Park, Young-Jun, Kelly, Katherine A., Filip, Szymon Krzysztof, Goo, Young Ah, Eng, Jimmy K., Allaire, Marc, Veesler, David, Wiggins, Paul A., Peterson, S. Brook, Mougous, Joseph D.

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Combining Ivacaftor and Intensive Antibiotics Achieves Limited Clearance of Cystic Fibrosis Infections von Durfey, Samantha L., Pipavath, Sudhakar, Li, Anna, Vo, Anh T., Ratjen, Anina, Carter, Suzanne, Morgan, Sarah J., Radey, Matthew C., Grogan, Brenda, Salipante, Stephen J., Welsh, Michael J., Stoltz, David A., Goss, Christopher H., McKone, Edward F., Singh, Pradeep K.

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Staphylococcus aureus Protein A Mediates Interspecies Interactions at the Cell Surface of Pseudomonas aeruginosa von Armbruster, Catherine R, Wolter, Daniel J, Mishra, Meenu, Hayden, Hillary S, Radey, Matthew C, Merrihew, Gennifer, MacCoss, Michael J, Burns, Jane, Wozniak, Daniel J, Parsek, Matthew R, Hoffman, Lucas R

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Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle von Wang, Yaxi, Gallagher, Larry A., Andrade, Pia A., Liu, Andi, Humphreys, Ian R., Turkarslan, Serdar, Cutler, Kevin J., Arrieta-Ortiz, Mario L., Li, Yaqiao, Radey, Matthew C., McLean, Jeffrey S., Cong, Qian, Baker, David, Baliga, Nitin S., Peterson, S. Brook, Mougous, Joseph D.

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Targeted Depletion of Bacteria from Mixed Populations by Programmable Adhesion with Antagonistic Competitor Cells von Ting, See-Yeun, Martínez-García, Esteban, Huang, Shuo, Bertolli, Savannah K., Kelly, Katherine A., Cutler, Kevin J., Su, Elizabeth D., Zhi, Hui, Tang, Qing, Radey, Matthew C., Raffatellu, Manuela, Peterson, S. Brook, de Lorenzo, Víctor, Mougous, Joseph D.

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An interbacterial DNA deaminase toxin directly mutagenizes surviving target populations von de Moraes, Marcos H., Hsu, FoSheng, Huang, Dean, Bosch, Dustin E., Zeng, Jun, Radey, Matthew C., Simon, Noah, Ledvina, Hannah E., Frick, Jacob P., Wiggins, Paul A., Peterson, S. Brook, Mougous, Joseph D.

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Genome Capture Sequencing Selectively Enriches Bacterial DNA and Enables Genome-Wide Measurement of Intrastrain Genetic Diversity in Human Infections von Hayden, Hillary S., Joshi, Snehal, Radey, Matthew C., Vo, Anh T., Forsberg, Cara, Morgan, Sarah J., Waalkes, Adam, Holmes, Elizabeth A., Klee, Sara M., Emond, Mary J., Singh, Pradeep K., Salipante, Stephen J.

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Secreted Effectors Encoded within and outside of the Francisella Pathogenicity Island Promote Intramacrophage Growth von Eshraghi, Aria, Kim, Jungyun, Walls, Alexandra C., Ledvina, Hannah E., Miller, Cheryl N., Ramsey, Kathryn M., Whitney, John C., Radey, Matthew C., Peterson, S. Brook, Ruhland, Brittany R., Tran, Bao Q., Goo, Young Ah, Goodlett, David R., Dove, Simon L., Celli, Jean, Veesler, David, Mougous, Joseph D.

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Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis von Manor, Ohad, Levy, Roie, Pope, Christopher E., Hayden, Hillary S., Brittnacher, Mitchell J., Carr, Rogan, Radey, Matthew C., Hager, Kyle R., Heltshe, Sonya L., Ramsey, Bonnie W., Miller, Samuel I., Hoffman, Lucas R., Borenstein, Elhanan

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Conditional toxicity and synergy drive diversity among antibacterial effectors von LaCourse, Kaitlyn D., Peterson, S. Brook, Kulasekara, Hemantha D., Radey, Matthew C., Kim, Jungyun, Mougous, Joseph D.

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Escherichia coli Clonobiome: Assessing the Strain Diversity in Feces and Urine by Deep Amplicon Sequencing von Shevchenko, Sofiya G, Radey, Matthew, Tchesnokova, Veronika, Kisiela, Dagmara, Sokurenko, Evgeni V

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Cystic Fibrosis Lung Function Decline after Within-Host Evolution Increases Virulence of Infecting Pseudomonas aeruginosa von Jorth, Peter, Durfey, Samantha, Rezayat, Amir, Garudathri, Jayanthi, Ratjen, Anina, Staudinger, Benjamin J., Radey, Matthew C., Genatossio, Alan, McNamara, Sharon, Cook, David A., Aitken, Moira L., Gibson, Ronald L., Yahr, Timothy L., Singh, Pradeep K.

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Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya von Akullian, Adam, Montgomery, Joel M, John-Stewart, Grace, Miller, Samuel I, Hayden, Hillary S, Radey, Matthew C, Hager, Kyle R, Verani, Jennifer R, Ochieng, John Benjamin, Juma, Jane, Katieno, Jim, Fields, Barry, Bigogo, Godfrey, Audi, Allan, Walson, Judd

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