A bacterial cytidine deaminase toxin enables CRISPR-free mitochondrial base editing von Mok, Beverly Y., de Moraes, Marcos H., Zeng, Jun, Bosch, Dustin E., Kotrys, Anna V., Raguram, Aditya, Hsu, FoSheng, Radey, Matthew C., Peterson, S. Brook, Mootha, Vamsi K., Mougous, Joseph D., Liu, David R.

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Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs von Jorth, Peter, Staudinger, Benjamin J., Wu, Xia, Hisert, Katherine B., Hayden, Hillary, Garudathri, Jayanthi, Harding, Christopher L., Radey, Matthew C., Rezayat, Amir, Bautista, Gilbert, Berrington, William R., Goddard, Amanda F., Zheng, Chunxiang, Angermeyer, Angus, Brittnacher, Mitchell J., Kitzman, Jacob, Shendure, Jay, Fligner, Corinne L., Mittler, John, Aitken, Moira L., Manoil, Colin, Bruce, James E., Yahr, Timothy L., Singh, Pradeep K.

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Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles von Nelson, Maria T., Pope, Christopher E., Marsh, Robyn L., Wolter, Daniel J., Weiss, Eli J., Hager, Kyle R., Vo, Anh T., Brittnacher, Mitchell J., Radey, Matthew C., Hayden, Hillary S., Eng, Alexander, Miller, Samuel I., Borenstein, Elhanan, Hoffman, Lucas R.

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A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria von Whitney, John C, Peterson, S Brook, Kim, Jungyun, Pazos, Manuel, Verster, Adrian J, Radey, Matthew C, Kulasekara, Hemantha D, Ching, Mary Q, Bullen, Nathan P, Bryant, Diane, Goo, Young Ah, Surette, Michael G, Borenstein, Elhanan, Vollmer, Waldemar, Mougous, Joseph D

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Combining Ivacaftor and Intensive Antibiotics Achieves Limited Clearance of Cystic Fibrosis Infections von Durfey, Samantha L., Pipavath, Sudhakar, Li, Anna, Vo, Anh T., Ratjen, Anina, Carter, Suzanne, Morgan, Sarah J., Radey, Matthew C., Grogan, Brenda, Salipante, Stephen J., Welsh, Michael J., Stoltz, David A., Goss, Christopher H., McKone, Edward F., Singh, Pradeep K.

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An interbacterial DNA deaminase toxin directly mutagenizes surviving target populations von de Moraes, Marcos H., Hsu, FoSheng, Huang, Dean, Bosch, Dustin E., Zeng, Jun, Radey, Matthew C., Simon, Noah, Ledvina, Hannah E., Frick, Jacob P., Wiggins, Paul A., Peterson, S. Brook, Mougous, Joseph D.

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Staphylococcus aureus Protein A Mediates Interspecies Interactions at the Cell Surface of Pseudomonas aeruginosa von Armbruster, Catherine R, Wolter, Daniel J, Mishra, Meenu, Hayden, Hillary S, Radey, Matthew C, Merrihew, Gennifer, MacCoss, Michael J, Burns, Jane, Wozniak, Daniel J, Parsek, Matthew R, Hoffman, Lucas R

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Secreted Effectors Encoded within and outside of the Francisella Pathogenicity Island Promote Intramacrophage Growth von Eshraghi, Aria, Kim, Jungyun, Walls, Alexandra C., Ledvina, Hannah E., Miller, Cheryl N., Ramsey, Kathryn M., Whitney, John C., Radey, Matthew C., Peterson, S. Brook, Ruhland, Brittany R., Tran, Bao Q., Goo, Young Ah, Goodlett, David R., Dove, Simon L., Celli, Jean, Veesler, David, Mougous, Joseph D.

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Genome Capture Sequencing Selectively Enriches Bacterial DNA and Enables Genome-Wide Measurement of Intrastrain Genetic Diversity in Human Infections von Hayden, Hillary S., Joshi, Snehal, Radey, Matthew C., Vo, Anh T., Forsberg, Cara, Morgan, Sarah J., Waalkes, Adam, Holmes, Elizabeth A., Klee, Sara M., Emond, Mary J., Singh, Pradeep K., Salipante, Stephen J.

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Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya von Akullian, Adam, Montgomery, Joel M, John-Stewart, Grace, Miller, Samuel I, Hayden, Hillary S, Radey, Matthew C, Hager, Kyle R, Verani, Jennifer R, Ochieng, John Benjamin, Juma, Jane, Katieno, Jim, Fields, Barry, Bigogo, Godfrey, Audi, Allan, Walson, Judd

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Discovery of coordinately regulated pathways that provide innate protection against interbacterial antagonism von Ting, See-Yeun, LaCourse, Kaitlyn D, Ledvina, Hannah E, Zhang, Rutan, Radey, Matthew C, Kulasekara, Hemantha D, Somavanshi, Rahul, Bertolli, Savannah K, Gallagher, Larry A, Kim, Jennifer, Penewit, Kelsi M, Salipante, Stephen J, Xu, Libin, Peterson, S Brook, Mougous, Joseph D

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The Landscape of Type VI Secretion across Human Gut Microbiomes Reveals Its Role in Community Composition von Verster, Adrian J., Ross, Benjamin D., Radey, Matthew C., Bao, Yiqiao, Goodman, Andrew L., Mougous, Joseph D., Borenstein, Elhanan

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Human gut bacteria contain acquired interbacterial defence systems von Ross, Benjamin D., Verster, Adrian J., Radey, Matthew C., Schmidtke, Danica T., Pope, Christopher E., Hoffman, Lucas R., Hajjar, Adeline M., Peterson, S. Brook, Borenstein, Elhanan, Mougous, Joseph D.

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GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis von Brittnacher, Mitchell J, Heltshe, Sonya L, Hayden, Hillary S, Radey, Matthew C, Weiss, Eli J, Damman, Christopher J, Zisman, Timothy L, Suskind, David L, Miller, Samuel I

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Ixodes scapularis does not harbor a stable midgut microbiome von Ross, Benjamin D., Hayes, Beth, Radey, Matthew C., Lee, Xia, Josek, Tanya, Bjork, Jenna, Neitzel, David, Paskewitz, Susan, Chou, Seemay, Mougous, Joseph D.

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Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins von Ting, See-Yeun, Bosch, Dustin E., Mangiameli, Sarah M., Radey, Matthew C., Huang, Shuo, Park, Young-Jun, Kelly, Katherine A., Filip, Szymon Krzysztof, Goo, Young Ah, Eng, Jimmy K., Allaire, Marc, Veesler, David, Wiggins, Paul A., Peterson, S. Brook, Mougous, Joseph D.

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Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness un... von Hayden, Hillary S, Matamouros, Susana, Hager, Kyle R, Brittnacher, Mitchell J, Rohmer, Laurence, Radey, Matthew C, Weiss, Eli J, Kim, Katie B, Jacobs, Michael A, Sims-Day, Elizabeth H, Yue, Min, Zaidi, Mussaret B, Schifferli, Dieter M, Manning, Shannon D, Walson, Judd L, Miller, Samuel I

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A population-level strain genotyping method to study pathogen strain dynamics in human infections von Morgan, Sarah J., Durfey, Samantha L., Ravishankar, Sumedha, Jorth, Peter, Ni, Wendy, Skerrett, Duncan T., Aitken, Moira L., McKone, Edward F., Salipante, Stephen J., Radey, Matthew C., Singh, Pradeep K.

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Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle von Wang, Yaxi, Gallagher, Larry A., Andrade, Pia A., Liu, Andi, Humphreys, Ian R., Turkarslan, Serdar, Cutler, Kevin J., Arrieta-Ortiz, Mario L., Li, Yaqiao, Radey, Matthew C., McLean, Jeffrey S., Cong, Qian, Baker, David, Baliga, Nitin S., Peterson, S. Brook, Mougous, Joseph D.

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Targeted Depletion of Bacteria from Mixed Populations by Programmable Adhesion with Antagonistic Competitor Cells von Ting, See-Yeun, Martínez-García, Esteban, Huang, Shuo, Bertolli, Savannah K., Kelly, Katherine A., Cutler, Kevin J., Su, Elizabeth D., Zhi, Hui, Tang, Qing, Radey, Matthew C., Raffatellu, Manuela, Peterson, S. Brook, de Lorenzo, Víctor, Mougous, Joseph D.

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