Tradition and Innovation in Scientists' Research Strategies von Foster, Jacob G., Rzhetsky, Andrey, Evans, James A.

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Classification of common human diseases derived from shared genetic and environmental determinants von Wang, Kanix, Gaitsch, Hallie, Poon, Hoifung, Cox, Nancy J, Rzhetsky, Andrey

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Evaluating phecodes, clinical classification software, and ICD-9-CM codes for phenome-wide association studies in the electronic health record von Wei, Wei-Qi, Bastarache, Lisa A, Carroll, Robert J, Marlo, Joy E, Osterman, Travis J, Gamazon, Eric R, Cox, Nancy J, Roden, Dan M, Denny, Joshua C

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Automated microfluidic platform for dynamic and combinatorial drug screening of tumor organoids von Schuster, Brooke, Junkin, Michael, Kashaf, Sara Saheb, Romero-Calvo, Isabel, Kirby, Kori, Matthews, Jonathan, Weber, Christopher R., Rzhetsky, Andrey, White, Kevin P., Tay, Savaş

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A DIseAse MOdule Detection (DIAMOnD) algorithm derived from a systematic analysis of connectivity patterns of disease proteins in the human interactome von Ghiassian, Susan Dina, Menche, Jörg, Barabási, Albert-László

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A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts von Westergaard, David, Stærfeldt, Hans-Henrik, Tønsberg, Christian, Jensen, Lars Juhl, Brunak, Søren

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Choosing experiments to accelerate collective discovery von Rzhetsky, Andrey, Foster, Jacob G., Foster, Ian T., Evans, James A.

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Environmental pollution is associated with increased risk of psychiatric disorders in the US and Denmark von Khan, Atif, Plana-Ripoll, Oleguer, Antonsen, Sussie, Brandt, Jørgen, Geels, Camilla, Landecker, Hannah, Sullivan, Patrick F, Pedersen, Carsten Bøcker, Rzhetsky, Andrey

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Network Properties of Genes Harboring Inherited Disease Mutations von Feldman, Igor, Rzhetsky, Andrey, Vitkup, Dennis

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Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts von Zhu, Kaiyi, Cai, Lingyi, Cui, Chenqian, de los Toyos, Juan R, Anastassiou, Dimitris

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Centralized scientific communities are less likely to generate replicable results von Danchev, Valentin, Rzhetsky, Andrey, Evans, James A

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Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine von Singhal, Ayush, Simmons, Michael, Lu, Zhiyong

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SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes von Lu, Jennifer, Salzberg, Steven L

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A fast, reproducible, high-throughput variant calling workflow for population genomics von Mirchandani, Cade D, Shultz, Allison J, Thomas, Gregg W C, Smith, Sara J, Baylis, Mara, Arnold, Brian, Corbett-Detig, Russ, Enbody, Erik, Sackton, Timothy B

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Machine learning liver-injuring drug interactions with non-steroidal anti-inflammatory drugs (NSAIDs) from a retrospective electronic health record (EHR) cohort von Datta, Arghya, Flynn, Noah R., Barnette, Dustyn A., Woeltje, Keith F., Miller, Grover P., Swamidass, S. Joshua

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Maximizing the information content of experiments in systems biology von Liepe, Juliane, Filippi, Sarah, Komorowski, Michał, Stumpf, Michael P H

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Predicting Phylogenetic Bootstrap Values via Machine Learning von Wiegert, Julius, Höhler, Dimitri, Haag, Julia, Stamatakis, Alexandros

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Gentrius: Generating Trees Compatible With a Set of Unrooted Subtrees and its Application to Phylogenetic Terraces von Chernomor, Olga, Elgert, Christiane, von Haeseler, Arndt

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Evolution of bow-tie architectures in biology von Friedlander, Tamar, Mayo, Avraham E, Tlusty, Tsvi, Alon, Uri

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How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation von Kouvaris, Kostas, Clune, Jeff, Kounios, Loizos, Brede, Markus, Watson, Richard A

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