The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion von Coleman, Jeffrey J, Rounsley, Steve D, Rodriguez-Carres, Marianela, Kuo, Alan, Wasmann, Catherine C, Grimwood, Jane, Schmutz, Jeremy, Taga, Masatoki, White, Gerard J, Zhou, Shiguo, Schwartz, David C, Freitag, Michael, Ma, Li-Jun, Danchin, Etienne G J, Henrissat, Bernard, Coutinho, Pedro M, Nelson, David R, Straney, Dave, Napoli, Carolyn A, Barker, Bridget M, Gribskov, Michael, Rep, Martijn, Kroken, Scott, Molnár, István, Rensing, Christopher, Kennell, John C, Zamora, Jorge, Farman, Mark L, Selker, Eric U, Salamov, Asaf, Shapiro, Harris, Pangilinan, Jasmyn, Lindquist, Erika, Lamers, Casey, Grigoriev, Igor V, Geiser, David M, Covert, Sarah F, Temporini, Esteban, Vanetten, Hans D

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Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing von Ros-Freixedes, Roger, Battagin, Mara, Johnsson, Martin, Gorjanc, Gregor, Mileham, Alan J, Rounsley, Steve D, Hickey, John M

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DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses von Wicker, Thomas, Yu, Yeisoo, Haberer, Georg, Mayer, Klaus F. X., Marri, Pradeep Reddy, Rounsley, Steve, Chen, Mingsheng, Zuccolo, Andrea, Panaud, Olivier, Wing, Rod A., Roffler, Stefan

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Molecular Characterization of Transgenic Events Using Next Generation Sequencing Approach von Guttikonda, Satish K, Marri, Pradeep, Mammadov, Jafar, Ye, Liang, Soe, Khaing, Richey, Kimberly, Cruse, James, Zhuang, Meibao, Gao, Zhifang, Evans, Clive, Rounsley, Steve, Kumpatla, Siva P

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QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii von Nzuki, Inosters, Katari, Manpreet S, Bredeson, Jessen V, Masumba, Esther, Kapinga, Fortunus, Salum, Kasele, Mkamilo, Geoffrey S, Shah, Trushar, Lyons, Jessica B, Rokhsar, Daniel S, Rounsley, Steve, Myburg, Alexander A, Ferguson, Morag E

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Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources von Ferguson, Morag E, Eyles, Rodney P, Garcia-Oliveira, Ana Luísa, Kapinga, Fortunus, Masumba, Esther A, Amuge, Teddy, Bredeson, Jessen V, Rokhsar, Daniel S, Lyons, Jessica B, Shah, Trushar, Rounsley, Steve, Mkamilo, Geoffrey

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Variations of five eIF4E genes across cassava accessions exhibiting tolerant and susceptible responses to cassava brown streak disease von Shi, Shanshan, Zhang, Xiuchun, Mandel, M Alejandra, Zhang, Peng, Zhang, Yuliang, Ferguson, Morag, Amuge, Teddy, Rounsley, Steve, Liu, Zhixin, Xiong, Zhongguo

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Scaffold filling, contig fusion and comparative gene order inference von Muñoz, Adriana, Zheng, Chunfang, Zhu, Qian, Albert, Victor A, Rounsley, Steve, Sankoff, David

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Sequence variation, evolutionary constraint, and selection at the CD163 gene in pigs von Johnsson, Martin, Ros-Freixedes, Roger, Gorjanc, Gregor, Campbell, Matt A, Naswa, Sudhir, Kelly, Kimberly, Lightner, Jonathan, Rounsley, Steve, Hickey, John M

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Identification of a Major QTL-Controlling Resistance to the Subtropical Race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis von Chen, Andrew, Sun, Jiaman, Martin, Guillaume, Gray, Lesley-Ann, Hřibová, Eva, Christelová, Pavla, Yahiaoui, Nabila, Rounsley, Steve, Lyons, Rebecca, Batley, Jacqueline, Chen, Ning, Hamill, Sharon, Rai, Subash K, Coin, Lachlan, Uwimana, Brigitte, D'Hont, Angelique, Doležel, Jaroslav, Edwards, David, Swennen, Rony, Aitken, Elizabeth A B

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Uneven chromosome contraction and expansion in the maize genome von Bruggmann, Rémy, Bharti, Arvind K, Gundlach, Heidrun, Lai, Jinsheng, Young, Sarah, Pontaroli, Ana C, Wei, Fusheng, Haberer, Georg, Fuks, Galina, Du, Chunguang, Raymond, Christina, Estep, Matt C, Liu, Renyi, Bennetzen, Jeffrey L, Chan, Agnes P, Rabinowicz, Pablo D, Quackenbush, John, Barbazuk, W Brad, Wing, Rod A, Birren, Bruce, Nusbaum, Chad, Rounsley, Steve, Mayer, Klaus F X, Messing, Joachim

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The Amborella Genome and the Evolution of Flowering Plants von Albert, Victor A, Barbazuk, WBradley, dePamphilis, Claude W, Der, Joshua P, Leebens-Mack, James, Ma, Hong, Palmer, Jeffrey D, Rounsley, Steve, Sankoff, David, Schuster, Stephan C, Soltis, Douglas E, Soltis, Pamela S, Wessler, Susan R, Wing, Rod A, Ammiraju, Jetty SS, Chamala, Srikar, Chanderbali, Andre S, Determann, Ronald, Ralph, Paula, Talag, Jason, Tomsho, Lynn, Walts, Brandon, Wanke, Stefan, Chang, Tien-Hao, Lan, Tianying, Arikit, Siwaret, Axtell, Michael J, Ayyampalayam, Saravanaraj, Burnette, James M, De Paoli, Emanuele, et. al

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Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity von Bredeson, Jessen V, Lyons, Jessica B, Prochnik, Simon E, Wu, G Albert, Ha, Cindy M, Edsinger-Gonzales, Eric, Grimwood, Jane, Schmutz, Jeremy, Rabbi, Ismail Y, Egesi, Chiedozie, Nauluvula, Poasa, Lebot, Vincent, Ndunguru, Joseph, Mkamilo, Geoffrey, Bart, Rebecca S, Setter, Tim L, Gleadow, Roslyn M, Kulakow, Peter, Ferguson, Morag E, Rounsley, Steve, Rokhsar, Daniel S

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The coffee genome provides insight into the convergent evolution of caffeine biosynthesis von Denoeud, France, Carretero-Paulet, Lorenzo, Dereeper, Alexis, Droc, Gaëtan, Guyot, Romain, Pietrella, Marco, Zheng, Chunfang, Alberti, Adriana, Anthony, François, Aprea, Giuseppe, Aury, Jean-Marc, Bento, Pascal, Bernard, Maria, Bocs, Stéphanie, Campa, Claudine, Cenci, Alberto, Combes, Marie-Christine, Crouzillat, Dominique, Da Silva, Corinne, Daddiego, Loretta, De Bellis, Fabien, Dussert, Stéphane, Garsmeur, Olivier, Gayraud, Thomas, Guignon, Valentin, Jahn, Katharina, Jamilloux, Véronique, Joët, Thierry, Labadie, Karine, Lan, Tianying, Leclercq, Julie, Lepelley, Maud, Leroy, Thierry, Li, Lei-Ting, Librado, Pablo, Lopez, Loredana, Muñoz, Adriana, Noel, Benjamin, Pallavicini, Alberto, Perrotta, Gaetano, Poncet, Valérie, Pot, David, Priyono, Rigoreau, Michel, Rouard, Mathieu, Rozas, Julio, Tranchant-Dubreuil, Christine, VanBuren, Robert, Zhang, Qiong, Andrade, Alan C., Argout, Xavier, Bertrand, Benoît, de Kochko, Alexandre, Graziosi, Giorgio, Henry, Robert J, Jayarama, Ming, Ray, Nagai, Chifumi, Rounsley, Steve, Sankoff, David, Giuliano, Giovanni, Albert, Victor A., Wincker, Patrick, Lashermes, Philippe

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Agriculture: Feeding the future von McCouch, Susan, Baute, Gregory J, Bradeen, James, Bramel, Paula, Bretting, Peter K, Buckler, Edward, Burke, John M, Charest, David, Cloutier, Sylvie, Cole, Glenn, Dempewolf, Hannes, Dingkuhn, Michael, Feuillet, Catherine, Gepts, Paul, Grattapaglia, Dario, Guarino, Luigi, Jackson, Scott, Knapp, Sandra, Langridge, Peter, Lawton-Rauh, Amy, Lijua, Qui, Lusty, Charlotte, Michael, Todd, Myles, Sean, Naito, Ken, Nelson, Randall L, Pontarollo, Reno, Richards, Christopher M, Rieseberg, Loren, Ross-Ibarra, Jeffrey, Rounsley, Steve, Hamilton, Ruaraidh Sackville, Schurr, Ulrich, Stein, Nils, Tomooka, Norihiko, van der Knaap, Esther, van Tassel, David, Toll, Jane, Valls, Jose, Varshney, Rajeev K, Ward, Judson, Waugh, Robbie, Wenzl, Peter, Zamir, Daniel

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Feeding the future von McCouch, Susan, Baute, Gregory J., Bradeen, James, Bramel, Paula, Bretting, Peter K., Buckler, Edward, Burke, John M., Charest, David, Cloutier, Sylvie, Cole, Glenn, Dempewolf, Hannes, Dingkuhn, Michael, Feuillet, Catherine, Gepts, Paul, Grattapaglia, Dario, Guarino, Luigi, Jackson, Scott, Knapp, Sandra, Langridge, Peter, Lawton-Rauh, Amy, Lijua, Qui, Lusty, Charlotte, Michael, Todd, Myles, Sean, Naito, Ken, Nelson, Randall L., Pontarollo, Reno, Richards, Christopher M., Rieseberg, Loren, Ross-Ibarra, Jeffrey, Rounsley, Steve, Hamilton, Ruaraidh Sackville, Schurr, Ulrich, Stein, Nils, Tomooka, Norihiko, van der Knaap, Esther, van Tassel, David, Toll, Jane, Valls, Jose, Varshney, Rajeev K., Ward, Judson, Waugh, Robbie, Wenzl, Peter, Zamir, Daniel

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Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses von O'Connell, Richard J, Thon, Michael R, Hacquard, Stéphane, Amyotte, Stefan G, Kleemann, Jochen, Torres, Maria F, Damm, Ulrike, Buiate, Ester A, Epstein, Lynn, Alkan, Noam, Altmüller, Janine, Alvarado-Balderrama, Lucia, Bauser, Christopher A, Becker, Christian, Birren, Bruce W, Chen, Zehua, Choi, Jaeyoung, Crouch, Jo Anne, Duvick, Jonathan P, Farman, Mark A, Gan, Pamela, Heiman, David, Henrissat, Bernard, Howard, Richard J, Kabbage, Mehdi, Koch, Christian, Kracher, Barbara, Kubo, Yasuyuki, Law, Audrey D, Lebrun, Marc-Henri, Lee, Yong-Hwan, Miyara, Itay, Moore, Neil, Neumann, Ulla, Nordström, Karl, Panaccione, Daniel G, Panstruga, Ralph, Place, Michael, Proctor, Robert H, Prusky, Dov, Rech, Gabriel, Reinhardt, Richard, Rollins, Jeffrey A, Rounsley, Steve, Schardl, Christopher L, Schwartz, David C, Shenoy, Narmada, Shirasu, Ken, Sikhakolli, Usha R, Stüber, Kurt, Sukno, Serenella A, Sweigard, James A, Takano, Yoshitaka, Takahara, Hiroyuki, Trail, Frances, van der Does, H Charlotte, Voll, Lars M, Will, Isa, Young, Sarah, Zeng, Qiandong, Zhang, Jingze, Zhou, Shiguo, Dickman, Martin B, Schulze-Lefert, Paul, Ver Loren van Themaat, Emiel, Ma, Li-Jun, Vaillancourt, Lisa J

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The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication von Wang, Muhua, Yu, Yeisoo, Haberer, Georg, Marri, Pradeep Reddy, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Song, Xiang, Kudrna, Dave, Ammiraju, Jetty S S, Cossu, Rosa Maria, Maldonado, Carlos, Chen, Jinfeng, Lee, Seunghee, Sisneros, Nick, de Baynast, Kristi, Golser, Wolfgang, Wissotski, Marina, Kim, Woojin, Sanchez, Paul, Ndjiondjop, Marie-Noelle, Sanni, Kayode, Long, Manyuan, Carney, Judith, Panaud, Olivier, Wicker, Thomas, Machado, Carlos A, Chen, Mingsheng, Mayer, Klaus F X, Rounsley, Steve, Wing, Rod A

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Cassava Genome: Current Progress, Future Directions von Prochnik, Simon, Marri, Pradeep Reddy, Desany, Brian, Rabinowicz, Pablo D, Kodira, Chinnappa, Mohiuddin, Mohammed, Rodriguez, Fausto, Fauquet, Claude, Tohme, Joseph, Harkins, Timothy, Rokhsar, Daniel S, Rounsley, Steve

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Assembly and Validation of the Genome of the Nonmodel Basal Angiosperm Amborella von Chamala, Srikar, Chanderbali, Andre S., Der, Joshua P., Lan, Tianying, Walts, Brandon, Albert, Victor A., dePamphilis, Claude W., Leebens-Mack, Jim, Rounsley, Steve, Schuster, Stephan C., Wing, Rod A., Xiao, Nianqing, Moore, Richard, Soltis, Pamela S., Soltis, Douglas E., Barbazuk, W. Brad

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