Plant Virus Metagenomics: Advances in Virus Discovery von Roossinck, Marilyn J, Martin, Darren P, Roumagnac, Philippe

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ICTV Virus Taxonomy Profile: Geminiviridae von Zerbini, F Murilo, Briddon, Rob W, Idris, Ali, Martin, Darren P, Moriones, Enrique, Navas-Castillo, Jesús, Rivera-Bustamante, Rafael, Roumagnac, Philippe, Varsani, Arvind, Ictv Report Consortium

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RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets von Martin, Darren P, Varsani, Arvind, Roumagnac, Philippe, Botha, Gerrit, Maslamoney, Suresh, Schwab, Tiana, Kelz, Zena, Kumar, Venkatesh, Murrell, Ben

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Establishment of five new genera in the family Geminiviridae: Citlodavirus, Maldovirus, Mulcrilevirus, Opunvirus, and Topilevirus von Roumagnac, Philippe, Lett, Jean-Michel, Fiallo-Olivé, Elvira, Navas-Castillo, Jesús, Zerbini, F. Murilo, Martin, Darren P., Varsani, Arvind

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High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.) von Bejerman, Nicolas, Roumagnac, Philippe, Nemchinov, Lev G.

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Illuminating an Ecological Blackbox: Using High Throughput Sequencing to Characterize the Plant Virome Across Scales von Maclot, François, Candresse, Thierry, Filloux, Denis, Malmstrom, Carolyn M, Roumagnac, Philippe, van der Vlugt, René, Massart, Sébastien

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Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context von Candresse, Thierry, Filloux, Denis, Muhire, Brejnev, Julian, Charlotte, Galzi, Serge, Fort, Guillaume, Bernardo, Pauline, Daugrois, Jean-Heindrich, Fernandez, Emmanuel, Martin, Darren P, Varsani, Arvind, Roumagnac, Philippe

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Nanopore-based detection and characterization of yam viruses von Filloux, Denis, Fernandez, Emmanuel, Loire, Etienne, Claude, Lisa, Galzi, Serge, Candresse, Thierry, Winter, Stephan, Jeeva, M. L., Makeshkumar, T., Martin, Darren P., Roumagnac, Philippe

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Recombination in eukaryotic single stranded DNA viruses von Martin, Darren P, Biagini, Philippe, Lefeuvre, Pierre, Golden, Michael, Roumagnac, Philippe, Varsani, Arvind

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An African origin for the intimate association between humans and Helicobacter pylori von Linz, Bodo, Balloux, François, Moodley, Yoshan, Manica, Andrea, Liu, Hua, Roumagnac, Philippe, Falush, Daniel, Stamer, Christiana, Prugnolle, Franck, van der Merwe, Schalk W., Yamaoka, Yoshio, Graham, David Y., Perez-Trallero, Emilio, Wadstrom, Torkel, Suerbaum, Sebastian, Achtman, Mark

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Diverse and variable virus communities in wild plant populations revealed by metagenomic tools von Susi, Hanna, Filloux, Denis, Frilander, Mikko J, Roumagnac, Philippe, Laine, Anna-Liisa

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Taxonomy update for the family Alphasatellitidae: new subfamily, genera, and species von Varsani, Arvind, Martin, Darren P., Randles, John W., Vetten, H. Josef, Thomas, John E., Fiallo-Olivé, Elvira, Navas-Castillo, Jesús, Lett, Jean-Michel, Zerbini, F. Murilo, Roumagnac, Philippe, Gronenborn, Bruno

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First historical genome of a crop bacterial pathogen from herbarium specimen: Insights into citrus canker emergence von Campos, Paola E, Groot Crego, Clara, Boyer, Karine, Gaudeul, Myriam, Baider, Claudia, Richard, Damien, Pruvost, Olivier, Roumagnac, Philippe, Szurek, Boris, Becker, Nathalie, Gagnevin, Lionel, Rieux, Adrien

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Sugarcane mild mosaic virus: The rediscovery of an identified but unrecognized virus von Mollov, Dimitre, Filloux, Denis, Grinstead, Samuel, Bolus, Stephen, Claude, Lisa, Fernandez, Emanuel, Julian, Charlotte, Candresse, Thierry, Lockhart, Ben, Roumagnac, Philippe, Rott, Philippe, Daugrois, Jean Heinrich

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Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus von Ma, Yuxin, Svanella-Dumas, Laurence, Julian, Charlotte, Galzi, Serge, Fernandez, Emmanuel, Yvon, Michel, Pirolles, Elodie, Lefebvre, Marie, Filloux, Denis, Roumagnac, Philippe, Candresse, Thierry

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Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics von Vayssier-Taussat, Muriel, Albina, Emmanuel, Citti, Christine, Cosson, Jean-Franҫois, Jacques, Marie-Agnès, Lebrun, Marc-Henri, Le Loir, Yves, Ogliastro, Mylène, Petit, Marie-Agnès, Roumagnac, Philippe, Candresse, Thierry

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Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso von Palanga, Essowè, Filloux, Denis, Martin, Darren P, Fernandez, Emmanuel, Gargani, Daniel, Ferdinand, Romain, Zabré, Jean, Bouda, Zakaria, Neya, James Bouma, Sawadogo, Mahamadou, Traore, Oumar, Peterschmitt, Michel, Roumagnac, Philippe

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Host range and molecular variability of the sadwavirus dioscorea mosaic associated virus von Umber, Marie, Filloux, Denis, Svanella-Dumas, Laurence, Bonheur, Lydiane, Acina-Mambole, Isabelle, Gomez, Rose-Marie, Faure, Chantal, Anzala, Fabiola, Pavis, Claudie, Roumagnac, Philippe, Marais, Armelle, Theil, Sébastien, Candresse, Thierry, Teycheney, Pierre-Yves

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Characterization of Six Ampeloviruses Infecting Pineapple in Reunion Island Using a Combination of High-Throughput Sequencing Approaches von Massé, Delphine, Candresse, Thierry, Filloux, Denis, Massart, Sébastien, Cassam, Nathalie, Hostachy, Bruno, Marais, Armelle, Fernandez, Emmanuel, Roumagnac, Philippe, Verdin, Eric, Teycheney, Pierre-Yves, Lett, Jean-Michel, Lefeuvre, Pierre

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Evolution and Population Structure of Salmonella enterica Serovar Newport von SANGAL, Vartul, HARBOTTLE, Heather, ROUMAGNAC, Philippe, ACHTMAN, Mark, MAZZONI, Camila J, HELMUTH, Reiner, GUERRA, Beatriz, DIDELOT, Xavier, PAGLIETTI, Bianca, RABSCH, Wolfgang, BRISSE, Sylvain, WEILL, François-Xavier

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