DeepLoc 2.0: multi-label subcellular localization prediction using protein language models von Thumuluri, Vineet, Almagro Armenteros, José Juan, Johansen, Alexander Rosenberg, Nielsen, Henrik, Winther, Ole

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Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences von Rosenberg, Alexander B., Patwardhan, Rupali P., Shendure, Jay, Seelig, Georg

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SignalP 6.0 predicts all five types of signal peptides using protein language models von Teufel, Felix, Almagro Armenteros, José Juan, Johansen, Alexander Rosenberg, Gíslason, Magnús Halldór, Pihl, Silas Irby, Tsirigos, Konstantinos D., Winther, Ole, Brunak, Søren, von Heijne, Gunnar, Nielsen, Henrik

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A Deep Neural Network for Predicting and Engineering Alternative Polyadenylation von Bogard, Nicholas, Linder, Johannes, Rosenberg, Alexander B., Seelig, Georg

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Microbial single-cell RNA sequencing by split-pool barcoding von Kuchina, Anna, Brettner, Leandra M, Paleologu, Luana, Roco, Charles M, Rosenberg, Alexander B, Carignano, Alberto, Kibler, Ryan, Hirano, Matthew, DePaolo, R William, Seelig, Georg

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Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences von Cuperus, Josh T, Groves, Benjamin, Kuchina, Anna, Rosenberg, Alexander B, Jojic, Nebojsa, Fields, Stanley, Seelig, Georg

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Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding von Rosenberg, Alexander B, Roco, Charles M, Muscat, Richard A, Kuchina, Anna, Sample, Paul, Yao, Zizhen, Graybuck, Lucas T, Peeler, David J, Mukherjee, Sumit, Chen, Wei, Pun, Suzie H, Sellers, Drew L, Tasic, Bosiljka, Seelig, Georg

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Diversity, cellular origin and autoreactivity of antibody-secreting cell population expansions in acute systemic lupus erythematosus von Tipton, Christopher M, Fucile, Christopher F, Darce, Jaime, Chida, Asiya, Ichikawa, Travis, Gregoretti, Ivan, Schieferl, Sandra, Hom, Jennifer, Jenks, Scott, Feldman, Ron J, Mehr, Ramit, Wei, Chungwen, Lee, F Eun-Hyung, Cheung, Wan Cheung, Rosenberg, Alexander F, Sanz, Iñaki

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Spatial and cell type transcriptional landscape of human cerebellar development von Aldinger, Kimberly A., Thomson, Zachary, Phelps, Ian G., Haldipur, Parthiv, Deng, Mei, Timms, Andrew E., Hirano, Matthew, Santpere, Gabriel, Roco, Charles, Rosenberg, Alexander B., Lorente-Galdos, Belen, Gulden, Forrest O., O’Day, Diana, Overman, Lynne M., Lisgo, Steven N., Alexandre, Paula, Sestan, Nenad, Doherty, Dan, Dobyns, William B., Seelig, Georg, Glass, Ian A., Millen, Kathleen J.

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Understanding B‐cell activation and autoantibody repertoire selection in systemic lupus erythematosus: A B‐cell immunomics approach von Tipton, Christopher M., Hom, Jennifer R., Fucile, Christopher F., Rosenberg, Alexander F., Sanz, Inaki

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Human Microbiota Flagellins Drive Adaptive Immune Responses in Crohn’s Disease von Alexander, Katie L., Zhao, Qing, Reif, Meagan, Rosenberg, Alexander F., Mannon, Peter J., Duck, Lennard Wayne, Elson, Charles O.

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Neonatal Exposure to Commensal-Bacteria-Derived Antigens Directs Polysaccharide-Specific B-1 B Cell Repertoire Development von New, J. Stewart, Dizon, Brian L.P., Fucile, Christopher F., Rosenberg, Alexander F., Kearney, John F., King, R. Glenn

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A Generative Neural Network for Maximizing Fitness and Diversity of Synthetic DNA and Protein Sequences von Linder, Johannes, Bogard, Nicholas, Rosenberg, Alexander B., Seelig, Georg

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Antifungal tolerance is a subpopulation effect distinct from resistance and is associated with persistent candidemia von Rosenberg, Alexander, Ene, Iuliana V., Bibi, Maayan, Zakin, Shiri, Segal, Ella Shtifman, Ziv, Naomi, Dahan, Alon M., Colombo, Arnaldo Lopes, Bennett, Richard J., Berman, Judith

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Sociobiology and the Preemption of Social Science von Rosenberg, Alexander

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B cells inhibit bone formation in rheumatoid arthritis by suppressing osteoblast differentiation von Sun, Wen, Meednu, Nida, Rosenberg, Alexander, Rangel-Moreno, Javier, Wang, Victor, Glanzman, Jason, Owen, Teresa, Zhou, Xichao, Zhang, Hengwei, Boyce, Brendan F., Anolik, Jennifer H., Xing, Lianping

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An introduction to deep learning on biological sequence data: examples and solutions von Jurtz, Vanessa Isabell, Johansen, Alexander Rosenberg, Nielsen, Morten, Almagro Armenteros, Jose Juan, Nielsen, Henrik, Sønderby, Casper Kaae, Winther, Ole, Sønderby, Søren Kaae

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IL-4 attenuates Th1-associated chemokine expression and Th1 trafficking to inflamed tissues and limits pathogen clearance von Lazarski, Christopher A, Ford, Jill, Katzman, Shoshana D, Rosenberg, Alexander F, Fowell, Deborah J

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Long-Lived Plasma Cells Are Contained within the CD19(-)CD38(hi)CD138(+) Subset in Human Bone Marrow von Halliley, Jessica L, Tipton, Christopher M, Liesveld, Jane, Rosenberg, Alexander F, Darce, Jaime, Gregoretti, Ivan V, Popova, Lana, Kaminiski, Denise, Fucile, Christopher F, Albizua, Igor, Kyu, Shuya, Chiang, Kuang-Yueh, Bradley, Kyle T, Burack, Richard, Slifka, Mark, Hammarlund, Erika, Wu, Hao, Zhao, Liping, Walsh, Edward E, Falsey, Ann R, Randall, Troy D, Cheung, Wan Cheung, Sanz, Iñaki, Lee, F Eun-Hyung

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Advances in human B cell phenotypic profiling von Kaminski, Denise A, Wei, Chungwen, Qian, Yu, Rosenberg, Alexander F, Sanz, Ignacio

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