Molecular and Genetic Properties of Tumors Associated with Local Immune Cytolytic Activity von Rooney, Michael S., Shukla, Sachet A., Wu, Catherine J., Getz, Gad, Hacohen, Nir

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Dnase2a deficiency uncovers lysosomal clearance of damaged nuclear DNA via autophagy von Lan, Yuk Yuen, Londoño, Diana, Bouley, Richard, Rooney, Michael S, Hacohen, Nir

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Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes von Shukla, Sachet A, Rooney, Michael S, Rajasagi, Mohini, Tiao, Grace, Dixon, Philip M, Lawrence, Michael S, Stevens, Jonathan, Lane, William J, Dellagatta, Jamie L, Steelman, Scott, Sougnez, Carrie, Cibulskis, Kristian, Kiezun, Adam, Hacohen, Nir, Brusic, Vladimir, Wu, Catherine J, Getz, Gad

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Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction von Abelin, Jennifer G., Keskin, Derin B., Sarkizova, Siranush, Hartigan, Christina R., Zhang, Wandi, Sidney, John, Stevens, Jonathan, Lane, William, Zhang, Guang Lan, Eisenhaure, Thomas M., Clauser, Karl R., Hacohen, Nir, Rooney, Michael S., Carr, Steven A., Wu, Catherine J.

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Dynamic profiling of the protein life cycle in response to pathogens von Jovanovic, Marko, Rooney, Michael S., Mertins, Philipp, Przybylski, Dariusz, Chevrier, Nicolas, Satija, Rahul, Rodriguez, Edwin H., Fields, Alexander P., Schwartz, Schraga, Raychowdhury, Raktima, Mumbach, Maxwell R., Eisenhaure, Thomas, Rabani, Michal, Gennert, Dave, Lu, Diana, Delorey, Toni, Weissman, Jonathan S., Carr, Steven A., Hacohen, Nir, Regev, Aviv

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A self-driving laboratory advances the Pareto front for material properties von MacLeod, Benjamin P., Parlane, Fraser G. L., Rupnow, Connor C., Dettelbach, Kevan E., Elliott, Michael S., Morrissey, Thomas D., Haley, Ted H., Proskurin, Oleksii, Rooney, Michael B., Taherimakhsousi, Nina, Dvorak, David J., Chiu, Hsi N., Waizenegger, Christopher E. B., Ocean, Karry, Mokhtari, Mehrdad, Berlinguette, Curtis P.

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A Phase Ib Trial of Personalized Neoantigen Therapy Plus Anti-PD-1 in Patients with Advanced Melanoma, Non-small Cell Lung Cancer, or Bladder Cancer von Ott, Patrick A., Hu-Lieskovan, Siwen, Chmielowski, Bartosz, Govindan, Ramaswamy, Naing, Aung, Bhardwaj, Nina, Margolin, Kim, Awad, Mark M., Hellmann, Matthew D., Lin, Jessica J., Friedlander, Terence, Bushway, Meghan E., Balogh, Kristen N., Sciuto, Tracey E., Kohler, Victoria, Turnbull, Samantha J., Besada, Rana, Curran, Riley R., Trapp, Benjamin, Scherer, Julian, Poran, Asaf, Harjanto, Dewi, Barthelme, Dominik, Ting, Ying Sonia, Dong, Jesse Z., Ware, Yvonne, Huang, Yuting, Huang, Zhengping, Wanamaker, Amy, Cleary, Lisa D., Moles, Melissa A., Manson, Kelledy, Greshock, Joel, Khondker, Zakaria S., Fritsch, Ed, Rooney, Michael S., DeMario, Mark, Gaynor, Richard B., Srinivasan, Lakshmi

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Defining HLA-II Ligand Processing and Binding Rules with Mass Spectrometry Enhances Cancer Epitope Prediction von Abelin, Jennifer G., Harjanto, Dewi, Malloy, Matthew, Suri, Prerna, Colson, Tyler, Goulding, Scott P., Creech, Amanda L., Serrano, Lia R., Nasir, Gibran, Nasrullah, Yusuf, McGann, Christopher D., Velez, Diana, Ting, Ying S., Poran, Asaf, Rothenberg, Daniel A., Chhangawala, Sagar, Rubinsteyn, Alex, Hammerbacher, Jeff, Gaynor, Richard B., Fritsch, Edward F., Greshock, Joel, Oslund, Rob C., Barthelme, Dominik, Addona, Terri A., Arieta, Christina M., Rooney, Michael S.

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Personalized neoantigen vaccine NEO-PV-01 with chemotherapy and anti-PD-1 as first-line treatment for non-squamous non-small cell lung cancer von Awad, Mark M., Govindan, Ramaswamy, Balogh, Kristen N., Spigel, David R., Garon, Edward B., Bushway, Meghan E., Poran, Asaf, Sheen, Joong Hyuk, Kohler, Victoria, Esaulova, Ekaterina, Srouji, John, Ramesh, Suchitra, Vyasamneni, Rohit, Karki, Binisha, Sciuto, Tracey E., Sethi, Himanshu, Dong, Jesse Z., Moles, Melissa A., Manson, Kelledy, Rooney, Michael S., Khondker, Zakaria S., DeMario, Mark, Gaynor, Richard B., Srinivasan, Lakshmi

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Exclusion of Older Adults from Cancer Clinical Trials: Review of the Literature and Future Recommendations von Bumanlag, Isabela M., Jaoude, Joseph Abi, Rooney, Michael K., Taniguchi, Cullen M., Ludmir, Ethan B.

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Ipilimumab for Patients with Relapse after Allogeneic Transplantation von Davids, Matthew S, Kim, Haesook T, Bachireddy, Pavan, Costello, Caitlin, Liguori, Rebecca, Savell, Alexandra, Lukez, Alexander P, Avigan, David, Chen, Yi-Bin, McSweeney, Peter, LeBoeuf, Nicole R, Rooney, Michael S, Bowden, Michaela, Zhou, Chensheng W, Granter, Scott R, Hornick, Jason L, Rodig, Scott J, Hirakawa, Masahiro, Severgnini, Mariano, Hodi, F. Stephen, Wu, Catherine J, Ho, Vincent T, Cutler, Corey, Koreth, John, Alyea, Edwin P, Antin, Joseph H, Armand, Philippe, Streicher, Howard, Ball, Edward D, Ritz, Jerome, Bashey, Asad, Soiffer, Robert J

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Sequence-based prediction of SARS-CoV-2 vaccine targets using a mass spectrometry-based bioinformatics predictor identifies immunogenic T cell epitopes von Poran, Asaf, Harjanto, Dewi, Malloy, Matthew, Arieta, Christina M, Rothenberg, Daniel A, Lenkala, Divya, van Buuren, Marit M, Addona, Terri A, Rooney, Michael S, Srinivasan, Lakshmi, Gaynor, Richard B

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Selective hydrogenation of furfural using a membrane reactor von Delima, Roxanna S, Stankovic, Mia D, MacLeod, Benjamin P, Fink, Arthur G, Rooney, Michael B, Huang, Aoxue, Jansonius, Ryan P, Dvorak, David J, Berlinguette, Curtis P

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The Role of Mass Spectrometry and Proteogenomics in the Advancement of HLA Epitope Prediction von Creech, Amanda L., Ting, Ying S., Goulding, Scott P., Sauld, John F.K., Barthelme, Dominik, Rooney, Michael S., Addona, Terri A., Abelin, Jennifer G.

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Electrochemical production of methyltetrahydrofuran, a biofuel for diesel engines von Stankovic, Mia D, Sperryn, Jessica F, Delima, Roxanna S, Rupnow, Connor C, Rooney, Michael B, Stolar, Monika, Berlinguette, Curtis P

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Readability of Patient Education Materials From High-Impact Medical Journals: A 20-Year Analysis von Rooney, Michael K, Santiago, Gaia, Perni, Subha, Horowitz, David P, McCall, Anne R, Einstein, Andrew J, Jagsi, Reshma, Golden, Daniel W

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Comparing experts’ and users’ perspectives on the use of password workarounds and the risk of data breaches von Rooney, Michael J, Levy, Yair, Li, Wei, Kumar, Ajoy

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Hybridization Liquid Chromatography–Tandem Mass Spectrometry: An Alternative Bioanalytical Method for Antisense Oligonucleotide Quantitation in Plasma and Tissue Samples von Li, Pei, Gong, Yuqing, Kim, Jaeah, Liu, Xingrong, Gilbert, James, Kerns, Hannah M, Groth, Rachel, Rooney, Michael

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High-Resolution Sequencing and Modeling Identifies Distinct Dynamic RNA Regulatory Strategies von Rabani, Michal, Raychowdhury, Raktima, Jovanovic, Marko, Rooney, Michael, Stumpo, Deborah J., Pauli, Andrea, Hacohen, Nir, Schier, Alexander F., Blackshear, Perry J., Friedman, Nir, Amit, Ido, Regev, Aviv

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A novel omega-3 free fatty acid formulation has dramatically improved bioavailability during a low-fat diet compared with omega-3-acid ethyl esters: the ECLIPSE (Epanova(®) compare... von Davidson, Michael H, Johnson, Judith, Rooney, Michael W, Kyle, Michael L, Kling, Douglas F

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